BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475553

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00750.1 | Symbols: RPS11 | ribosomal protein S11 | chrC:789...   743    0.0  


> ATCG00750.1 | Symbols: RPS11 | ribosomal protein S11 | chrC:78960-79376 
REVERSE LENGTH=417
Length=417

 Score =  743 bits (402),  Expect = 0.0
 Identities = 412/417 (99%), Gaps = 0/417 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAAACCTATATTAAGAATTGGTTCGCGTAAAAATACACGTAGTGGTTCACGTAAA  60

Query  61   AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AATGTACGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATT  120

Query  121  GTGACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCGGGTACTTGTGGA  180
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GTAACCGTTACAGATGTACGGGGTCGGGTGATTTCTTGGTCCTCCGCAGGTACTTGTGGA  180

Query  181  TTCCGGGGTACAAGAAGAGGAACGCCTTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT  240
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  181  TTCCGGGGTACAAGAAGAGGAACACCCTTTGCTGCCCAAACCGCAGCAGGAAATGCTATT  240

Query  241  CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGAGCAGTAGTGGATCAAGGTATGCAACGAGCTGAAGTAAGGATAAAAGGCCCTGGACTC  300

Query  301  GGAAGAGATGCAGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGA  360
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGAAGAGATGCGGCATTACGAGCTATTCGTAGAAGCGGTATACTTTTAAGTTTCGTACGA  360

Query  361  GATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTaaaaaaaGACGTGTATAG  417
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GATGTAACCCCTATGCCACATAATGGTTGTAGACCCCCTAAAAAAAGACGTGTATAG  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5