BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475560
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer ... 1685 0.0
> ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer
A | chrC:61657-62619 FORWARD LENGTH=963
Length=963
Score = 1685 bits (912), Expect = 0.0
Identities = 941/955 (99%), Gaps = 1/955 (0%)
Strand=Plus/Plus
Query 1 ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC 60
Query 61 TCACTCATGATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTCATAATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC 120
Query 121 CAGCAGAATTATGAAAATCCACGAGAGGCAACTGGGCGTATTGTATGTGCCAATTGCCAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAGCAGAATTATGAAAATCCACGAGAGGCGACTGGGCGTATTGTATGTGCCAATTGCCAT 180
Query 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT 240
Query 241 GAAGCAGTTATTAAAATTCCTTATGATATGCAACTAAAACAAGTTCTAGCTAATGGTAAA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCAGTTGTTAAAATTCCTTATGATATGCAACTAAAACAAGTTCTAGCTAATGGTAAA 300
Query 301 AAAGGAGCTTTGAATGTGGGAGCTGTTCTTATTTTACCGGAGGGGTTTGAATTAGccccc 360
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAAGGGGCTTTGAATGTGGGAGCTGTTCTTATTTTACCGGAGGGTTTTGAATTAGCCCCC 360
Query 361 cccGATCGTATTTCACCCGAGATGAAAGAAAAGATAGGAAATCTGGCTTTTCAGAATTAT 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CCCGATCGTATTTCACCCGAGATGAAAGAAAAGATAGGAAATCTTTCTTTTCAGAATTAT 420
Query 421 CGCCCCAATaaaaaaaaTATTCTTGTGATAGGTCCTGTTCCTGGTCAAAAATATAGTGAA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTCCCAATAAAAAAAATATTCTTGTGATAGGTCCTGTTCCTGGTCAAAAATATAGTGAA 480
Query 481 ATAACCTTTCCTATTCTTGCTCCGGACCCTGCTACTAATAAAGATGTTCACTTCTTAAAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAACCTTTCCTATTCTTGCTCCAGACCCTGCTACTAATAAAGATGTTCACTTCTTAAAA 540
Query 541 TATCCTATATATGTAGGTGGAAACAGGGGAAGGGGTCAGATTTATCCTGATGGTAGCAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCCTATATATGTAGGTGGAAACAGGGGAAGGGGTCAGATTTATCCTGATGGTAGCAAA 600
Query 601 AGTAACAATACAGTTTATAATGCTACGGCAGGAGGGATAATAAGTAAAATTTTACGAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTAACAATACAGTTTATAATGCTACGGCAGGAGGGATAATAAGTAAAATTTTACGAAAA 660
Query 661 GAAAAAGGGGGATACGAAATAACCATAGTGGATGCATCAAATGGACGCGAAGTGATTGAT 720
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 661 GAAAAGGGGGGATACGAAATAACCATAGTGGATGCATCGAATGGACGCGAAGTTATTGAT 720
Query 721 ATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAGGGCGAATCCATTAAACTCGATCAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAGGGCGAATCCATTAAACTCGATCAA 780
Query 781 CCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTT 840
Query 841 CAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTCTTAGGATCGGTTGTTTTGGCACAA 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CAAGATCCATTACGTGTCCAAGGTCTTTTGTTCTTCTTAGGATCGGTTGTTTTGGCACAA 900
Query 901 ATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGT-CAATTATCCGAAATGA 954
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 ATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGTTCAATTATCCGAAATGA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5