BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475563 Length=1440 Score E Sequences producing significant alignments: (Bits) Value ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylase... 2599 0.0 AT2G07732.1 | Symbols: | Ribulose bisphosphate carboxylase lar... 961 0.0 ATMG00280.1 | Symbols: ORF110A | Ribulose bisphosphate carboxyl... 516 3e-145 AT3G32895.1 | Symbols: | transposable element gene | chr3:1343... 115 1e-24 AT3G22238.1 | Symbols: | pseudogene, putative ribulose 1,5-bis... 102 9e-21 AT3G22234.1 | Symbols: | pseudogene, putative ribulose 1,5-bis... 102 9e-21 > ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=1440 Length=1440 Score = 2599 bits (1407), Expect = 0.0 Identities = 1429/1440 (99%), Gaps = 0/1440 (0%) Strand=Plus/Plus Query 1 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGAGTAT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGGTTCAAAGCTGGTGTTAAAGAGTAT 60 Query 61 AAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTC 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAATTGACTTACTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTC 120 Query 121 CGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAA 180 Query 181 TCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTAC 240 Query 241 AAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTAT 300 Query 301 GTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACCTCGATT 360 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTAGCTTATCCCTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACCTCGATT 360 Query 361 GTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATC 420 Query 421 CCTCCTGCTTATACTAAAACTTTCCAAGGACCACCTCATGGTATCCAAGTTGAAAGAGAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTCCTGCTTATACTAAAACTTTCCAAGGACCACCTCATGGTATCCAAGTTGAAAGAGAT 480 Query 481 AAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTA 540 Query 541 TCCGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACC 600 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCCGCGAAAAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACC 600 Query 601 AAAGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AAAGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTT 660 Query 661 TGTGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TGTGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTG 720 Query 721 AATGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AATGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTG 780 Query 781 GGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTG 840 Query 841 GCTCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TCTCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTT 900 Query 901 ATTGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATTGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTA 960 Query 961 TCTGGTGGAGATCATGTTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAG 1020 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TCTGGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAG 1020 Query 1021 TCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGC 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGC 1080 Query 1081 GGTATCTTTTTCACTCAAGATTGGGTCTCACTACCAGGTGTTCTGCCTGTGGCTTCAGGG 1140 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1081 GGTATCTTTTTCACTCAAGATTGGGTCTCACTACCTGGTGTTCTGCCTGTGGCTTCAGGG 1140 Query 1141 GGTATTCACGTTTGGCATATGCCTGCTTTGACCGAGATCTTTGGAGATGATTCTGTACTA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGTATTCACGTTTGGCATATGCCTGCTTTGACCGAGATCTTTGGAGATGATTCTGTACTA 1200 Query 1201 CAATTCGGTGGAGGAACTTTAGGCCACCCTTGGGGAAATGCACCGGGTGCCGTAGCTAAC 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1201 CAATTCGGTGGAGGAACTTTAGGCCACCCTTGGGGAAATGCACCGGGTGCCGTAGCCAAC 1260 Query 1261 CGAGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCAGTCGAG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 CGAGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCAGTCGAG 1320 Query 1321 GGTAATGAAATTATCCGTGAAGCTTGCAAGTGGAGTCCTGAACTAGCTGCTGCTTGTGAA 1380 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1321 GGTAATGAAATTATCCGTGAAGCTTGCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAA 1380 Query 1381 GTATGGAAAGAGATCAGATTTAACTTCCCAACCGTCGATAAATTAGATGGCCAAGAGTAG 1440 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 1381 GTATGGAAAGAGATCACATTTAACTTCCCAACCATCGATAAATTAGATGGCCAAGAGTAG 1440 > AT2G07732.1 | Symbols: | Ribulose bisphosphate carboxylase large chain, catalytic domain | chr2:3468168-3468774 REVERSE LENGTH=607 Length=607 Score = 961 bits (520), Expect = 0.0 Identities = 557/574 (97%), Gaps = 5/574 (1%) Strand=Plus/Plus Query 543 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAA 602 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 39 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTTATTTTACCAA 98 Query 603 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 158 Query 663 TGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTGAA 722 |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 159 TGCCGAAGCTGTTTATAAAGCACAGGCTGAAACAGGTGGAATCAAAGGGCATTATTTGAA 218 Query 723 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 782 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 TGCTACTCCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 278 Query 783 AGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTGGC 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 AGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTGGC 338 Query 843 TCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTTAT 902 ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 339 TCATT----C-GAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCATGCTGTTAT 393 Query 903 TGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTATC 962 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 394 TGATAGACAGAAGAATCATGGTTTGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTATC 453 Query 963 TGGTGGAGATCATGTTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAGTC 1022 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 454 TGGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGAGAGTC 513 Query 1023 AACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGCGG 1082 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 514 AACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATTGAAGCCGCGG 573 Query 1083 TATCTTTTTCACTCAAGATTGGGTCTCACTACCA 1116 |||||||||||||||||||||| |||| |||||| Sbjct 574 TATCTTTTTCACTCAAGATTGGATCTCGCTACCA 607 > ATMG00280.1 | Symbols: ORF110A | Ribulose bisphosphate carboxylase large chain, catalytic domain | chrM:77819-78151 REVERSE LENGTH=333 Length=333 Score = 516 bits (279), Expect = 3e-145 Identities = 290/295 (98%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 543 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAA 602 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 39 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTTATTTTACCAA 98 Query 603 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 158 Query 663 TGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTGAA 722 |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 159 TGCCGAAGCTGTTTATAAAGCACAGGCTGAAACAGGTGGAATCAAAGGGCATTATTTGAA 218 Query 723 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 278 Query 783 AGTTCCTATCGTAATGCATGACTACTTAA-CAGGGGGATTCACCGCAAATACTAG 836 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 279 AGTTCCTATCGTAATGCATGACTACTTAAACAGGGGGATTCACCGCAAATACTAG 333 > AT3G32895.1 | Symbols: | transposable element gene | chr3:13431016-13435542 FORWARD LENGTH=4527 Length=4527 Score = 115 bits (62), Expect = 1e-24 Identities = 64/65 (98%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1011 AGACAGGGAGTCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGA 1070 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3089 AGACAGGGAGTCAACTTTGGGCTTTGTTGATTTACTGCACGATGATTATGTTGAAAAAGA 3148 Query 1071 TCGAA 1075 ||||| Sbjct 3149 TCGAA 3153 > AT3G22238.1 | Symbols: | pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471 ribulose-1,5-bisphosphate carboxylase large subunit {Dioscorea pyrenaica} | chr3:7861995-7862568 FORWARD LENGTH=574 Length=574 Score = 102 bits (55), Expect = 9e-21 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 5 CACCACAAACAGAGACTAAAGCAAGTGTTGGA-TTCAAAGCTGGTGTTAAAGAGTATAAA 63 |||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||| Sbjct 5 CACCACAAACAGAGACTAAAGCAATTTTTGGATTTCAAA-TTGGTGTTAAAGAGTATAAA 63 Query 64 TTGACTTATTA 74 ||||||||||| Sbjct 64 TTGACTTATTA 74 > AT3G22234.1 | Symbols: | pseudogene, putative ribulose 1,5-bisphosphate carboxylase, similar to ribulose 1,5-bisphosphate carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471 ribulose-1,5-bisphosphate carboxylase large subunit {Dioscorea pyrenaica} | chr3:7852903-7853476 FORWARD LENGTH=574 Length=574 Score = 102 bits (55), Expect = 9e-21 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 5 CACCACAAACAGAGACTAAAGCAAGTGTTGGA-TTCAAAGCTGGTGTTAAAGAGTATAAA 63 |||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||| Sbjct 5 CACCACAAACAGAGACTAAAGCAATTTTTGGATTTCAAA-TTGGTGTTAAAGAGTATAAA 63 Query 64 TTGACTTATTA 74 ||||||||||| Sbjct 64 TTGACTTATTA 74 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70983570630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5