BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475566

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00430.1 | Symbols: PSBG | photosystem II reaction center pr...  1219    0.0  


> ATCG00430.1 | Symbols: PSBG | photosystem II reaction center 
protein G | chrC:49257-49934 REVERSE LENGTH=678
Length=678

 Score = 1219 bits (660),  Expect = 0.0
 Identities = 672/678 (99%), Gaps = 0/678 (0%)
 Strand=Plus/Plus

Query  1    ATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACAAAAAATTCCGTTATTTCAACT  60
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAATTCCATTAAGTTTCCCATACTTGATCGAACAACAAAAAATTCCGTTATTTCAACT  60

Query  61   ACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGT  120

Query  121  ACCAGTTGTTGTTTCATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCAGTTGTTGTTTCATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGT  180

Query  181  TATGGGTTAGTACCAAGATCGAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATGGGTTAGTACCAAGATCGAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACA  240

Query  241  GTAACAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCAAAG  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  GTAACAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCGAAG  300

Query  301  TATGTTATTGCTATGGGAGCGTGTACAATTACgggggggATGTTCAGTACCGATTCTTAT  360
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  301  TATGTTATTGCTATGGGAGCCTGTACAATTACAGGGGGGATGTTCAGTACCGATTCTTAT  360

Query  361  AGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA  420

Query  421  CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAA  480

Query  481  ATCTATAAGGATCGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAG  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  ATCTATAAGGATCGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAG  540

Query  541  TTTTTTGTTGTACGCAGTCCGCATATTGGAAATTATGATCAAGAATTACTCTATCCACCA  600
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  541  TTTTTTGTTGTACGCAGTCCGCATATTGGAAATTATGATCAAGAACTACTCTATCCACCA  600

Query  601  TCATCTACTTCAGAGATCTCTACTGAAAAATTTTTTAAATACAAAAGTCCAGTATCGTCC  660
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  601  TCATCTACTTCAGAGATCTCTACTGAAACATTTTTTAAATACAAAAGTCCAGTATCGTCC  660

Query  661  CACGAATTAGTGAATTAG  678
            ||||||||||||||||||
Sbjct  661  CACGAATTAGTGAATTAG  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32802897991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5