BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475579
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00160.1 | Symbols: RPS2 | ribosomal protein S2 | chrC:15013... 630 4e-180
AT3G33002.1 | Symbols: | pseudogene, ribosomal protein S2p fam... 551 3e-156
> ATCG00160.1 | Symbols: RPS2 | ribosomal protein S2 | chrC:15013-15723
REVERSE LENGTH=711
Length=711
Score = 630 bits (341), Expect = 4e-180
Identities = 347/350 (99%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAAAGATATTGGAACATCGATTTGGAAGAGATGATGAGAGCAGGAGTTCATTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACAAAAAGATATTGGAACATCGATTTGGAAGAGATGATGAGAGCAGGAGTTCATTTT 60
Query 61 GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTGCAAAGCGTAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTGCAAAGCGTAAA 120
Query 121 GGTATTCATATTATAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTATTCATATTATAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTA 180
Query 181 GTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAATAAAGCA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTTGATGCGGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAATAAAGCA 240
Query 241 GCCGATTTAGTGTCGCGGGCTGCAATACGGGCTCGGTGTCATTATGTTAATAAAAAATGG 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGATTTAGTGTCGCGGGCTGCAATACGGGCTCGGTGTCATTATGTTAATAAAAAATGG 300
Query 301 CTCGGCGGCATGTTAACAAATTGGTCCACTACAGAAAAAAGACTTCATAA 350
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CTCGGCGGCATGTTAACAAATTGGTCCACTACCGAAAAAAGACTTCATAA 350
Score = 590 bits (319), Expect = 7e-168
Identities = 326/329 (99%), Gaps = 1/329 (0%)
Strand=Plus/Plus
Query 351 AGGGA-TCAACCGTCTTCCGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCT 409
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 AGGGATTCAACCGTCTTCCGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCT 442
Query 410 TGGAAACATATCTAGGCGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGGAAACATATCTAGGCGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC 502
Query 470 TCGATCAGCAAGAAGAATATACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TCGATCAGCAAGAAGAATATACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA 562
Query 530 TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGCGGATATTTCTATTCCAGCAAATG 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 563 TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGCGGATATTTCTATTCCCGCAAATG 622
Query 590 ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATTTGTGAGG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATTTGTGAGG 682
Query 650 GTCGTTCTAGCTATATACAAAATTCTTGA 678
| |||||||||||||||||||||||||||
Sbjct 683 GCCGTTCTAGCTATATACAAAATTCTTGA 711
> AT3G33002.1 | Symbols: | pseudogene, ribosomal protein S2p family,
blastp match of 84% identity and 7.7e-92 P-value to SP|Q9BBS6|RR2_LOTJA
Chloroplast 30S ribosomal protein S2. {Lotus
japonicus} | chr3:13538067-13538776 REVERSE LENGTH=710
Length=710
Score = 551 bits (298), Expect = 3e-156
Identities = 317/326 (97%), Gaps = 1/326 (0%)
Strand=Plus/Plus
Query 351 AGGGA-TCAACCGTCTTCCGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCT 409
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGGGATTCAACCGTCTTCTGAAAAGGGATGCAGCTGTGTTGAAGAGACAATTATCTCGCA 444
Query 410 TGGAAACATATCTAGGCGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC 469
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGAAACATATCTAGGTGGGATTAAATATATGACGGGATTGCCTGATATTGTAATCATCC 504
Query 470 TCGATCAGCAAGAAGAATATACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA 529
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TCGATCAGCAAGAAGAATAGACGGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACCA 564
Query 530 TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGCGGATATTTCTATTCCAGCAAATG 589
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 565 TTTCTTTAATCGATACAAATTGTAATCCCGATCTCGTGGATATTTCTATTCCCGCAAATG 624
Query 590 ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATTTGTGAGG 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 625 ATGACGCTATAGCTTCAATTCGATTCATTCTTAACAAATTAGTATTCGCAATATGTGAGG 684
Query 650 GTCGTTCTAGCTATATACAAAATTCT 675
| ||||||||||||||||||||||||
Sbjct 685 GCCGTTCTAGCTATATACAAAATTCT 710
Score = 527 bits (285), Expect = 6e-149
Identities = 331/353 (94%), Gaps = 4/353 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAAAGATATTGGAACATCGATTTGGAAGAGATGATGAGAGCAGGAGTTCATTTT 60
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 ATGACAAAAAGATATTGGAACATCGATTTGGAAAAGATAATGAGAGCAGGAGTTCATTTT 60
Query 61 GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTGCAAAGCGTAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 61 GGACATGGTACGAGGAAATGGAATCCTAGAATGGCACCTTATATTTCTACAAAACATAAA 120
Query 121 GGTATTCATATTATAAATCTGACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTA 180
|||||||| |||||||||||||||| ||||| || ||||| || ||||| ||||||||||
Sbjct 121 GGTATTCAGATTATAAATCTGACTATAACTGTTCATTTTTAATAAGAAGATTGTGATTTA 180
Query 181 GTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAA-TAAAGC 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTTTTTGATGCGGCAAGTAGGGGAAAACAATTCTTAATTGTTGGGACAAAAAACTAAAGC 240
Query 240 AGCCGATTTAGTGTCGCGGGCTGCAATACGGGCTCGGTGTCATTATGTTAATAAAAAATG 299
||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 241 AGCTGATTTAGTGTCGCGGGCTACAATACGGGCTTGGTTTCATTATGTTAATAAAAAATG 300
Query 300 GCTCGGCGGCATGTTAACAAATTGGTCCACTAC-AGAAA-AAAGACTTCATAA 350
||||||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 301 GCTCGGCGGCATGTTAACAAATTGGTCCACTACCA-AAACAAATACTTCATAA 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5