BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475583

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00130.1 | Symbols: ATPF | ATPase, F0 complex, subunit B/B',...   678    0.0  


> ATCG00130.1 | Symbols: ATPF | ATPase, F0 complex, subunit B/B', 
bacterial/chloroplast | chrC:11529-12798 REVERSE LENGTH=555
Length=555

 Score =  678 bits (367),  Expect = 0.0
 Identities = 421/444 (95%), Gaps = 16/444 (4%)
 Strand=Plus/Plus

Query  1    ATGAAAAATTTAACCGATTCTTTCGTTTACTTGGGTCACTGGCCATCCGCCGGGAGTTTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAAATTTAACCGATTCTTTCGTTTACTTGGGTCACTGGCCATCCGCCGGGAGTTTC  60

Query  61   GGATTTAATACCGATATTTTAGCAACAAATCTAATAAATCTAAGTGTAGTTTTCGGTGTA  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   GGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGTGTAGTTTTCGGTGTA  120

Query  121  TTGATCTTTTTTGGAAAGGGAGTGTATAATCTACTTTCATTAAATGATTTATTAGATAAC  180
            ||||||||||||||||||||||||               |||||||||||||||||||||
Sbjct  121  TTGATCTTTTTTGGAAAGGGAGTG---------------TTAAATGATTTATTAGATAAC  165

Query  181  CGAAAGCAGAGGATATTAAATACTATTCGAAATTCAGAAGAACTGCGTGAAGGAGCTATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  166  CGAAAGCAGAGGATATTAAATACTATTCGAAATTCAGAAGAACTGCGTGAAGGAGCTATT  225

Query  241  CAACAATTAGAAAATGCCCGGGCTCGCTTGCGTAAAGTAGAAACGGAAGCGGATCAGTTT  300
            ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct  226  CAACAATTAGAAAATGCCCGGGCGCGCTTGCGTAACGTAGAAACGGAAGCGGATAAGTTT  285

Query  301  CGCGTGAATGGATACTCTGAAATCGAACGAGAAAAATTAAATTTGATTAATTCAATTTAT  360
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct  286  CGCGTGAATGGATACTCTGAAATCGAACGAGAAAAATTGAATTTGATTAATTCAACTTAT  345

Query  361  AAGACTTTGAAACAATTAGAAAATTACAAAAATGAAACCATTCTTTT-GAGCAACAAAGA  419
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  346  AAAACTTTGAAACAATTAGAAAATTACAAAAATGAAACCATTCTTTTTGAGCAACAAAGA  405

Query  420  ACAATTAATCAAGTCCGCGAACGG  443
            ||||||||||||||||||||||||
Sbjct  406  ACAATTAATCAAGTCCGCGAACGG  429


 Score =  148 bits (80),  Expect = 4e-35
 Identities = 82/83 (99%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  443  GTTGTTTGAGTAACGAGTTACATTTACGTACTATTAATGCAAATATTGGGATGTTTGGTA  502
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  GTTGTTTGAGTAATGAGTTACATTTACGTACTATTAATGCAAATATTGGGATGTTTGGTA  532

Query  503  CGATGAAAGAAATAACTGATTAA  525
            |||||||||||||||||||||||
Sbjct  533  CGATGAAAGAAATAACTGATTAA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5