BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475585
Length=238
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00050.1 | Symbols: RPS16 | ribosomal protein S16 | chrC:508... 390 3e-108
> ATCG00050.1 | Symbols: RPS16 | ribosomal protein S16 | chrC:5084-6188
REVERSE LENGTH=240
Length=240
Score = 390 bits (211), Expect = 3e-108
Identities = 229/238 (96%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 1 ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAATGAGCCGTTTATCGAATCGTT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1 ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACGAGCCGTTTATCGAATCCTT 60
Query 61 GCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTAGCAAGGTGGGTTTTTATGAT 120
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCAATTGATGTTCGATACCGAAGAGAAGGAAGAGATCTTAGTAAGGTGGGTTTTTATGAT 120
Query 121 CCGATAACAAATCAAACTTTTTTAAATCTTCCTGCTATTCTCGATTTTCTTAAAAAAGGA 180
|| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 CCCATAACTAATCAAACTTTTTTAAACCTTTCTGCTATTCTCGATTTTCTTAAAAAAGGA 180
Query 181 GCTCAACCAACAAGAACAGTTCATGATATTTCAAAGAAGGCTGGGATTTTTACGGAAT 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCAACCAACAAGAACAGCTCATGATATTTCAAAGAAGGCTGGGATTTTTACGGAAT 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10757298286
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5