BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475589
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65320.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 2152 0.0
> AT1G65320.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr1:24259888-24262951 REVERSE LENGTH=1865
Length=1865
Score = 2152 bits (1165), Expect = 0.0
Identities = 1415/1528 (93%), Gaps = 47/1528 (3%)
Strand=Plus/Plus
Query 1 TTTAATGGCGTCAGTGTTCTTGTATCACGTAGTGGGAGATTTAACTGTAGGAAAGCCAGA 60
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 304 TTTAATGGCGTCAGTGTTCTTGTATCATGTGGTGGGAGATTTAACTGTAGGAAAGCCAGA 363
Query 61 GATGGTTGAGTTCTACGAAACAGAGACGGTGGAATCTGCGATTAGAGCCATCGGAGAGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 364 GATGGTTGAGTTCTACGAAACAGAGACGGTGGAATCTGCGATTAGAGCTATCGGAGAATC 423
Query 121 GACGGAGTGTGGGATTCCGGTTTGGAGGAAGAGATCGACGCCGAATCTTCCTGGATTTGT 180
|||||||||||||||||||||||||||||||||| |||| || |||||||| |||||
Sbjct 424 GACGGAGTGTGGGATTCCGGTTTGGAGGAAGAGAACGACACCTTCGCTTCCTGGGTTTGT 483
Query 181 GGAGAATAGTGAGATGAGACAACAAAGATTTGTTGGGATTTTGAATTCTTTAGATATCGT 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 484 TGAGAATAGTGAGATGAGACAACAAAGATTCGTTGGGATTTTGAATTCTTTAGATATCGT 543
Query 241 TGCGTTTTTGGCTAAGAGTGAGTGTTTGCAAGAAGATAAAGCTATGAAGATTCCTGTCTC 300
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 544 TGCGTTTTTGGCTAAGACTGAGTGTTTGCAAGAAGAAAAAGCTATGAAGATTCCTGTCTC 603
Query 301 TGAGGTTGTTTCTCCTGACAATACTCTACTT-AAACAGGTTGATCCTGGGACAAGGTTGA 359
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 604 TGAGGTTGTTTCTCCTGACAATACTCTA-TTGAAACAGGTTGATCCTGGGACTAGGTTGA 662
Query 360 TAGATGCTTTGGAGATGATGAAACAAGGAGTGAGACGACTTCTGGTTCCGAGAAGCGTTG 419
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 663 TAGATGCTTTGGAGATGATGAAACAAGGAGTGAGACGACTTCTGGTTCCAAAAAGCGTTG 722
Query 420 TTTGGAGAGGTATGAGCAAGAGATTCTCCATTCTTTACAATGGAAAATGGCTGAAGAACA 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 TTTGGAGAGGTATGAGCAAGAGGTTCTCCATTCTTTACAATGGAAAATGGCTGAAGAACA 782
Query 480 GTGAAAACTCTAGTAGTAGTAGTGGTCTCGCTGCTGATTCCACCAACAGGCCTACTACGT 539
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 783 GTGAAAACTCTAGTAGTAGCAGTGGTCTCTCTGCTGACTCCACCAACAGGCCTACTACGT 842
Query 540 CCATGACTTCAAGCCGGGACAAGTTTTGCTGTCTGTCAAGGGAAGACGTGATCCGCTTCC 599
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 843 CCATGACTTCAAGCCGGGACAAGTTTTGTTGTCTCTCTAGGGAAGACGTGATCCGCTTCC 902
Query 600 TTATAGGTGTCCTTGGAGCATTAGCACCTTTACCACTCACATCAATCTCCACTCTGGGAA 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 903 TTATAGGTGTCCTTGGAGCATTAGCTCCTTTACCACTCACATCAATCTCCACTCTGGGAA 962
Query 660 TCATCAATCAAAACTATAACTTCATTGAAGCTTCTCTTCCAGCCATCGAAGCCACCCGAA 719
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 963 TCATCAATCAAAACTATAACTTCATTGAAGCCTCTCTTCCAGCCATTGAAGCCACTCGTA 1022
Query 720 GGCCACCATGTGACCCCAGTGCGATCGCCGTGTTGGAACAAACCGAAAACGAACAACAGT 779
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGCCACTGTGTGACCCTAGTGCGATCGCCGTGTTGGAACAAACCGAAAACGAACAACAGT 1082
Query 780 TCAAGATAATAGGAGAAATCTCAGCTTCAAAGCTTTGGAAATGTGATTATCTGGCTGCAG 839
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1083 TCAAGATAATAGGAGAAATCTCAGCTTCAAAGCTCTGGAAATGTGATTATCTAGCTGCAG 1142
Query 840 CTTGGGCTCTAGCTAATCTATATGCAGGACAATTTGTGATGGGAGTTGAGGACAACATGT 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CTTGGGCTCTAGCTAATCTCTATGCAGGACAATTTGTGATGGGAGTTGAGGACAACATGT 1202
Query 900 CATCAAGATCATTCAGCGACTTCCTCCAAACTTCATTTCCAGGAGGAGAACAGAACGGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CATCAAGATCATTCAGCGACTTCCTCCAAACTTCATTTCCAGGAGGAGAACAGAACGGAA 1262
Query 960 CA--A-CAAAGGCCAAAAAATTCAGCAGCAGGAGTATAGGTTTTAATCCAACAAGCCCGA 1016
|| | |||| ||||| || |||||||||||||| || ||||||||||| ||||||||||
Sbjct 1263 CAGCAACAAATGCCAAGAAGTTCAGCAGCAGGAGCATCGGTTTTAATCCGACAAGCCCGA 1322
Query 1017 CAAGATTAAGCATCGGTAGGAGCATGTACAGAGGAAGAAGTGCGCCGTTAACTTGCAAAA 1076
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1323 CAAGATTGAGCATCGGTAGGAGCATGTACAGAGGAAGAAGTGCGCCGCTAACTTGCAAAA 1382
Query 1077 CATCGAGCTCATTAGCTGCAGTCATGGCTCAGATGCTATCTCACAGGGCCACACATGTTT 1136
||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||
Sbjct 1383 CATCGAGCTCATTAGCTGCTGTTATGGCTCAGATGCTGTCTCACAGGGCTACTCATGTTT 1442
Query 1137 GGGTTACAGAGGCTGATTCAGATGATGTTCTTGTTGGAGTTGTGGGCTATGGAGAAATCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1443 GGGTTACAGAGGCTGATTCAGATGATGTTCTTGTTGGAGTTGTGGGCTATGGAGAGATCT 1502
Query 1197 TGACTGCTGTAACTAAACAACCTTCTGCTTTCGTTCCTTCGAATCGGTCTTATGAAGGTT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGACTGCTGTAACTAAACAACCTTCTGCTTTCGTTCCTTCGAATCGGTCTTATGAAGGTT 1562
Query 1257 TTGGCAATGAAAATCAAAGTTAAGACTACAATCAAAA-------T---CT-------GTC 1299
||||||||||||||||||| |||||||||||| |||| | || |||
Sbjct 1563 TTGGCAATGAAAATCAAAGCTAAGACTACAATAAAAAAAAAAGATGGTCTCATTTCTGTC 1622
Query 1300 TATTATCCTGTGAGACGTTCTCAAGATAGAAGGATAATATTTTTGGGTGTTTAGTCAATT 1359
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1623 TGTTATCCTGTGAGACGTTCTCAGGATAGAAGGATAATATTTTTGGGTGCTTAGTCAATT 1682
Query 1360 TGTAA--GC--A--A--AGT-T-AA-AT-CA---TCT--T--T-T-GTGTCCTCTGGAAA 1398
||| | | | | ||| | || | || | | | | | ||||||| || |||
Sbjct 1683 TGTTATTGGGTACTACTAGTGTCAAGAAGCAAAGTTTAATCATCTTGTGTCCTGTGAAAA 1742
Query 1399 A-GTTGCTTTTGAGACGT-CTAAGGATAGAAGGATTTTATATTCTTGGGTATTCAGTCAA 1456
| |||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||
Sbjct 1743 AAGTTGCTTTTGAGACGTTCTATGGATAGAAGGATT--ATATTCTTGGGTGTTCAGTCAA 1800
Query 1457 TTTGTATACTATTGAGTCTAGTGTCAGA 1484
||||| ||||||||| |||| |||||||
Sbjct 1801 TTTGTGTACTATTGAATCTATTGTCAGA 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5