BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475592

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   228    3e-59


> AT1G65342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 5 Blast hits to 5 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:24271276-24271700 FORWARD LENGTH=336
Length=336

 Score =  228 bits (123),  Expect = 3e-59
 Identities = 153/167 (92%), Gaps = 3/167 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGAATACTTGTAGAATCAGCTTCATAAGCTCCATGATTCTCTTGCTCTTTATCAAT  60
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct  1    ATGGTGAATACTTGTAGAATCAGCTTCATAAGCTTCATGATACTCTTGCTCTTCATCAAT  60

Query  61   CAGTCGGCTCTTTCTTCTTCTGTACGCATCGGTCTACAAGAAGGTCGAGATCTTGTTCAC  120
            |||||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  61   CAGTCATCTCTTTCTTCTTCTGTACGCATCGGTCTACAAGGAGGTCGAGATCTTATTCAC  120

Query  121  CATCGGACACTTGATGAGATTGAAAGAGCGGACAAAGCACGTCTCAG  167
            || || ||||||||||||||||| ||||   |||| |||||||||||
Sbjct  121  CACCGTACACTTGATGAGATTGAGAGAG---ACAAGGCACGTCTCAG  164


 Score =  102 bits (55),  Expect = 2e-21
 Identities = 64/68 (94%), Gaps = 2/68 (3%)
 Strand=Plus/Plus

Query  230  CGAGAGCCTTTGATTTGGTTGCTTTAGGGTTTGATACTTCGATGTATCATATAAACCCt-  288
            |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  258  CGAG-GCCTTTGGTTTGGTTCCTTTAGGGTTTGATACTTCGATGTATCATATAAACCCTC  316

Query  289  tttttttA  296
            ||||||||
Sbjct  317  TTTTTTTA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5