BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475593
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00270.1 | Symbols: PSBD | photosystem II reaction center pr... 1947 0.0
AT2G07738.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 150 2e-35
ATCG00280.1 | Symbols: PSBC | photosystem II reaction center pr... 95.3 1e-18
> ATCG00270.1 | Symbols: PSBD | photosystem II reaction center
protein D | chrC:32711-33772 FORWARD LENGTH=1062
Length=1062
Score = 1947 bits (1054), Expect = 0.0
Identities = 1058/1060 (99%), Gaps = 0/1060 (0%)
Strand=Plus/Plus
Query 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAAAGATTTATTTGATATTATGGAT 60
Query 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCT 120
Query 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTAT 180
Query 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCT 240
Query 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGA 300
Query 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCT 360
Query 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGA 420
Query 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATT 480
Query 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTT 540
Query 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 600
Query 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAA 660
Query 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAA 720
Query 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACAGCTTTTGGTCACAAATCTTTGGGGTT 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTT 780
Query 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTA 840
Query 841 TGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTT 900
Query 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATT 960
Query 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTT 1020
Query 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 1060
||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 1060
> AT2G07738.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:3492339-3492786 REVERSE LENGTH=448
Length=448
Score = 150 bits (81), Expect = 2e-35
Identities = 103/113 (91%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 854 TTG-GAGTAG-TCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 911
||| |||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 50 TTGTGAGT-GATCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 108
Query 912 CCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTT 964
|||| ||||||||||||| ||||||||||||||||| || |||||| ||||||
Sbjct 109 CCGTACAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATCTTCTTT 161
> ATCG00280.1 | Symbols: PSBC | photosystem II reaction center
protein C | chrC:33720-35141 FORWARD LENGTH=1422
Length=1422
Score = 95.3 bits (51), Expect = 1e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1010 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5