BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475597
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12905.1 | Symbols: | unknown protein; Has 30201 Blast hits... 366 4e-101
AT2G13146.1 | Symbols: | Pseudogene of AT2G12905 | chr2:543103... 337 3e-92
> AT2G12905.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:5296364-5296582
FORWARD LENGTH=219
Length=219
Score = 366 bits (198), Expect = 4e-101
Identities = 212/219 (97%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 1 TCAATGGTTATACGGGTATCCAAAGTACGAACGAGATGGATGTTTATTGTTCCAACCATG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TCAATGGTTATACGGGTATCCAAAGTACGAACGAGATGGATGTTTATTGTTCCAACCATT 160
Query 61 TTAATTAGTCCCAATCCCAACGAAGAAGAAGAAAGAAAGGGAATCATTTTGAAGAAAGTT 120
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 159 TTGATTAGTCCCAATCCCAACAAAGAAGAAGAAAGAAAGGGAATCATTTTTAAGAAAGTT 100
Query 121 TTTGTGTTGTTGATTTCTCGGCGTAGTGCTTCTTCCCCTATGCCTCCTATTCGTATATTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 99 TTTGTGTTGTTGATTTCTCGGCGTAGTGCTTCTTCCCCTATGCCTCCTATTTGTATATTG 40
Query 181 TATTAGTGTAGTAGGATTGATCTGTAATACGGGAACCAT 219
||||||||||||| |||||||||||||||| ||||||||
Sbjct 39 TATTAGTGTAGTAAGATTGATCTGTAATACCGGAACCAT 1
> AT2G13146.1 | Symbols: | Pseudogene of AT2G12905 | chr2:5431033-5431247
FORWARD LENGTH=215
Length=215
Score = 337 bits (182), Expect = 3e-92
Identities = 206/217 (95%), Gaps = 3/217 (1%)
Strand=Plus/Minus
Query 1 TCAATGGTTATACGGGTATCCAAAGTACGAACGAGATGGATGTTTATTGTTCCAACCATG 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCAATGGTTATACGAGTATCCAAAGTACGAACGAGATGGATGTTTATTGTTCCAACCAT- 157
Query 61 T-TAATTAGTCCCAATCCCAACGAAGAAGAAGAAAGAAAGGGAATCATTTTGAAGAAAGT 119
| | |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 156 TCTGATTAGTCCCAATCCCAT-GAAGAAGAAGAAAGAAAAGGAATCATTTTTAAGAAAGT 98
Query 120 TTTTGTGTTGTTGATTTCTCGGCGTAGTGCTTCTTCCCCTATGCCTCCTATTCGTATATT 179
||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 97 TTTCGTGTTGTTGATTTCTCGGCATAGTGCTTCTTCCCCTATGCCTCCTATTCGGATATT 38
Query 180 GTATTAGTGTAGTAGGATTGATCTGTAATACGGGAAC 216
|||||||||||||||||||||||||||||||||||||
Sbjct 37 GTATTAGTGTAGTAGGATTGATCTGTAATACGGGAAC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5