BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475599

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00430.1 | Symbols: PSBG | photosystem II reaction center pr...   760    0.0  


> ATCG00430.1 | Symbols: PSBG | photosystem II reaction center 
protein G | chrC:49257-49934 REVERSE LENGTH=678
Length=678

 Score =  760 bits (411),  Expect = 0.0
 Identities = 421/426 (99%), Gaps = 0/426 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCAAAGTATGTTATTGCT  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  253  ATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCGAAGTATGTTATTGCT  312

Query  61   ATGGGAGCGTGTACAATTACgggggggATGTTCAGTACCGATTCTTATAGTACTGTTCGA  120
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  313  ATGGGAGCCTGTACAATTACAGGGGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGA  372

Query  121  GGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  GGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAG  432

Query  181  GCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  GCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGGAT  492

Query  241  CGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  493  CGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTA  552

Query  301  CGCAGTCCGCATATTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCA  360
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  553  CGCAGTCCGCATATTGGAAATTATGATCAAGAACTACTCTATCCACCATCATCTACTTCA  612

Query  361  GAGATCTCTACTGAAAAATTTTTTAAATACAAAAGTCCAGTATCGTCCCACGAATTAGTG  420
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  GAGATCTCTACTGAAACATTTTTTAAATACAAAAGTCCAGTATCGTCCCACGAATTAGTG  672

Query  421  AATTAG  426
            ||||||
Sbjct  673  AATTAG  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5