BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475600
Length=221
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC... 403 3e-112
> ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663
REVERSE LENGTH=399
Length=399
Score = 403 bits (218), Expect = 3e-112
Identities = 220/221 (99%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 237
Query 61 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 297
Query 121 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 357
Query 181 AAACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 221
| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9902746553
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5