BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475601
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 2669 0.0
AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family prot... 113 4e-24
AT1G55100.1 | Symbols: | transposable element gene | chr1:2055... 113 4e-24
> ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta |
chrC:52660-54156 REVERSE LENGTH=1497
Length=1497
Score = 2669 bits (1445), Expect = 0.0
Identities = 1479/1496 (99%), Gaps = 0/1496 (0%)
Strand=Plus/Plus
Query 1 ATGAGAACAAATCCTACTACTTCGGATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTG 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACAAATCCTACTACTTCAAATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTG 60
Query 61 GGACGTATCGCTCAAATCATTGGTCCGGTACTGGATGTAGCCTTTCCCCCGGGCAAAATG 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGACGTATCGCCCAAATCATTGGTCCGGTACTGGATGTAGCCTTCCCCCCGGGCAAAATG 120
Query 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180
Query 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240
Query 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300
Query 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360
Query 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420
Query 421 CAATTAGATACAAAATTATCAATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATTAGATACAAAATTATCGATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480
Query 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540
Query 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600
Query 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660
Query 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTCTATGGTCAGATGAAT 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTTTATGGTCAGATGAAT 720
Query 721 GAACCACCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAACCGCCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780
Query 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCAACAATATCTTCCGTTTCGTACAA 840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840
Query 841 GCAGGATCTGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900
Query 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACAAAAAAGGGGTCC 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACGAAAAAGGGGTCC 960
Query 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCTCCTGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCACCTGCC 1020
Query 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080
Query 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140
Query 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAGCAAACTTTACAACGTTACAAGGAG 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAACAAACTTTACAACGTTACAAGGAG 1200
Query 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACC 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACC 1260
Query 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320
Query 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAAATTG 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAATTTG 1380
Query 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCTGAACAGGCCTTTTACTTAGTGGGTAACATC 1440
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCCGAACAGGCCTTTTACTTAGTGGGTAACATC 1440
Query 1441 GATGAAGCTACTGCGAAGGCTACAAACTTAGAAATGGAGAGTAAATTGAAGAAATG 1496
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 GATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGTAAATTGAAGAAATG 1496
> AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family protein
| chr1:20554352-20558529 FORWARD LENGTH=2762
Length=2762
Score = 113 bits (61), Expect = 4e-24
Identities = 110/131 (84%), Gaps = 14/131 (11%)
Strand=Plus/Minus
Query 797 AAGACGTACTTCT--ATTTATCA-ACAATATCTTCCGTTTCGTACAAGCAGGATCTGAGG 853
||||||||||||| | | || | ||||||||||||||||||||||||||||||| ||
Sbjct 2588 AAGACGTACTTCTACAGTCAT-AGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA-- 2532
Query 854 TATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCG 913
| | ||||||| ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 2531 T-T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAG 2480
Query 914 AAATGGGTACT 924
|||||||||||
Sbjct 2479 AAATGGGTACT 2469
> AT1G55100.1 | Symbols: | transposable element gene | chr1:20558235-20559103
REVERSE LENGTH=869
Length=869
Score = 113 bits (61), Expect = 4e-24
Identities = 110/131 (84%), Gaps = 14/131 (11%)
Strand=Plus/Plus
Query 797 AAGACGTACTTCT--ATTTATCA-ACAATATCTTCCGTTTCGTACAAGCAGGATCTGAGG 853
||||||||||||| | | || | ||||||||||||||||||||||||||||||| ||
Sbjct 749 AAGACGTACTTCTACAGTCAT-AGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA-- 805
Query 854 TATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCG 913
| | ||||||| ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 806 T-T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAG 857
Query 914 AAATGGGTACT 924
|||||||||||
Sbjct 858 AAATGGGTACT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5