BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475605

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00520.1 | Symbols: YCF4 | unfolded protein binding | chrC:5...  1007    0.0  


> ATCG00520.1 | Symbols: YCF4 | unfolded protein binding | chrC:59772-60326 
FORWARD LENGTH=555
Length=555

 Score = 1007 bits (545),  Expect = 0.0
 Identities = 551/554 (99%), Gaps = 0/554 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGTTGGCGATCAGAATCTATATGGATAGAATTTATAACGGGGTCTCGAAAAACAAGT  60

Query  61   AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AATTTCTGCTGGGCCTTTATCCTATTTTTAGGTTCATTAGGATTCTTATTGGTTGGAACT  120

Query  121  TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCAtttttttt  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCCAGTTATCTTGGTAGAAATGTTATATCGTTATTTCCGTCCCAGCAAATCATTTTTTTT  180

Query  181  CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCACAAGGGATTGTGATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGTTGCTATTTG  240

Query  241  TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATTATCTTTTCGACCGAAAAGAAGGA  300
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  241  TGGTGCACTATTTTGTGGAATGTGGGTAGTGGTTATGATCTTTTCGACCGAAAAGAAGGA  300

Query  301  ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATAGTGCGTATTTTTCGTTGGGGATTTCCTGGAAAAAGTCGTCGCATCTTTTTACGATTC  360

Query  361  TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCTCGACGT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  361  TTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTGTTTCTGCCCGGCGT  420

Query  421  GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GTCCTTTATATGGAAATTCGAGGTCAAGGGGCTATTCCTTTAATTCGTACTGATGAGAAT  480

Query  481  TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TTTACTACACGAGAAATTGAGCAAAAAGCTGCTGAATTGGCTTACTTCTTGCGTGTACCA  540

Query  541  ATTGAAGTATTTTG  554
            ||||||||||||||
Sbjct  541  ATTGAAGTATTTTG  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26573863763


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5