BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475606

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer ...   893    0.0  


> ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer 
A | chrC:61657-62619 FORWARD LENGTH=963
Length=963

 Score =  893 bits (483),  Expect = 0.0
 Identities = 499/507 (98%), Gaps = 0/507 (0%)
 Strand=Plus/Plus

Query  304  GTTCCTGGTCAAAAATATAGTGAAATAACCTTTCCTATTCTTGCTCCGGACCCTGCTACT  363
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  457  GTTCCTGGTCAAAAATATAGTGAAATAACCTTTCCTATTCTTGCTCCAGACCCTGCTACT  516

Query  364  AATAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGTGGAAACAGGGGAAGGGGT  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  AATAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGTGGAAACAGGGGAAGGGGT  576

Query  424  CAGATTTATCCTGATGGTAGCAAAAGTAACAATACAGTTTATAATGCTACGGCAGGAGGG  483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  577  CAGATTTATCCTGATGGTAGCAAAAGTAACAATACAGTTTATAATGCTACGGCAGGAGGG  636

Query  484  ATAATAAGTAAAATTTTACGAAAAGAAAAAGGGGGATACGAAATAACCATAGTGGATGCA  543
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  637  ATAATAAGTAAAATTTTACGAAAAGAAAAGGGGGGATACGAAATAACCATAGTGGATGCA  696

Query  544  TCAAATGGACGCAAAGTGATTGATATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAG  603
            || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  697  TCGAATGGACGCGAAGTTATTGATATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAG  756

Query  604  GGCGAATCCATTAAACTCGAGCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGT  663
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  757  GGCGAATCCATTAAACTCGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGT  816

Query  664  CAGGGAGATGCGGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTC  723
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  817  CAGGGGGATGCGGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGTCTTTTGTTCTTC  876

Query  724  TTAGGATCGGTTGTTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAG  783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  877  TTAGGATCGGTTGTTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAG  936

Query  784  GTTCAATTATCCGAAATGAATTTTTAG  810
            |||||||||||||||||||||||||||
Sbjct  937  GTTCAATTATCCGAAATGAATTTTTAG  963


 Score =  433 bits (234),  Expect = 2e-120
 Identities = 242/246 (98%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  1    ATGCAAACTATAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC  60
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTC  60

Query  61   TCACTCATGATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCACTCATAATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCC  120

Query  121  CACCAGAATTATGAAAATCCACGAGAGGCAACTGGGCGTATTGTATGTGCCAATTGCCAT  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  CAGCAGAATTATGAAAATCCACGAGAGGCGACTGGGCGTATTGTATGTGCCAATTGCCAT  180

Query  181  TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTT  240

Query  241  GAAGCA  246
            ||||||
Sbjct  241  GAAGCA  246


 Score =  111 bits (60),  Expect = 8e-24
 Identities = 60/60 (100%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  247  AAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTTGAAGCAGTT  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  AAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTTGAAGCAGTT  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39433805395


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5