BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475609
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00710.1 | Symbols: PSBH | photosystem II reaction center pr... 399 4e-111
> ATCG00710.1 | Symbols: PSBH | photosystem II reaction center
protein H | chrC:74485-74706 FORWARD LENGTH=222
Length=222
Score = 399 bits (216), Expect = 4e-111
Identities = 220/222 (99%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACACAAACTGTTGAGGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACACAAACTGTTGAAGATAGTTCTAGATCTGGTCCAAGAAGCACTACTGTAGGG 60
Query 61 AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCTGGATGGGGAACGACC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AAGTTATTGAAACCATTGAATTCCGAATATGGTAAAGTAGCTCCCGGATGGGGAACGACC 120
Query 121 CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTTGATGGGTGTTGCAATGGCTCTATTTGCGGTATTCCTATCTATTATTTTGGAGATT 180
Query 181 TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATAATTCTTCTGTTCTACTGGATGGAATTTCAGTGAATTAG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5