BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475611

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00730.1 | Symbols: PETD | photosynthetic electron transfer ...   837    0.0  


> ATCG00730.1 | Symbols: PETD | photosynthetic electron transfer 
D | chrC:76481-77672 FORWARD LENGTH=483
Length=483

 Score =  837 bits (453),  Expect = 0.0
 Identities = 457/459 (99%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  1    TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  25   TTGAATGATCCTGTATTACGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTACGGG  84

Query  61   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTCATTCTTGGTACCATT  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  85   GAACCCGCATGGCCCAACGACCTTTTATATATTTTTCCAGTAGTTATTCTTGGTACCATT  144

Query  121  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  GCCTGTAACGTAGGCTTAGCGGTTTTAGAACCATCAATGATTGGTGAACCTGCGGATCCT  204

Query  181  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  TTTGCAACTCCTTTGGAAATATTACCTGAATGGTATTTCTTTCCTGTATTTCAAATACTT  264

Query  241  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  CGTACAGTGCCTAACAAATTATTGGGTGTTCTTTTAATGGTTTCAGTACCAGCGGGATTA  324

Query  301  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  325  TTAACCGTACCCTTTTTGGAAAATGTTAATAAGTTTCAAAATCCATTTCGTCGTCCAGTA  384

Query  361  GCGACAACCGtttttttGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  420
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  GCGACAACCGTCTTTTTGATTGGCACCGCGGCGGCCCTGTGGTTAGGTATTGGAGCAACA  444

Query  421  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  459
            |||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTACCGATTGATAAATCTCTAACTTTAGGTCTTTTTTAA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5