BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475616

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:811...   420    3e-117


> ATCG00790.1 | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652 
REVERSE LENGTH=408
Length=408

 Score =  420 bits (227),  Expect = 3e-117
 Identities = 243/250 (97%), Gaps = 3/250 (1%)
 Strand=Plus/Plus

Query  1    ATGACACGAAATGTACGACGTGGTGAAAAAATTTGGGTACGTATATTTCCAGACAAACCA  60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  160  ATGACACGAAATGTACGACGTGGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCA  219

Query  61   GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCCGAGTATTGG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  220  GTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGG  279

Query  121  GTAGCTGTGGCTAAACCAGGTAAAATCCTTTAT-ATAATGGGTGGTGTACCCGAAAATAT  179
            |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  280  GTAGCTGTGGTTAAACCAGGTAAAATCCTTTATGA-AATGGGTGGTGTACCCGAAAATAT  338

Query  180  AGCCAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACC-AATTCATTAT  238
            ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  339  AGCAAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACCCAATTCATTAT  398

Query  239  TTCTGAATAG  248
            ||||||||||
Sbjct  399  TTCTGAATAG  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11259975776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5