BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475617

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00800.1 | Symbols:  | structural constituent of ribosome | ...   588    1e-167


> ATCG00800.1 | Symbols:  | structural constituent of ribosome 
| chrC:82826-83482 REVERSE LENGTH=657
Length=657

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 324/327 (99%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGGAATTGCACGTATCGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATC  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  169  ATGGAGGGAATTGCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATC  228

Query  61   TATATGGGATTTCCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  229  TATATGGGATTTCCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAG  288

Query  121  ATGAATGTTCAAAAAGAACTTAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGA  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  289  ATGAATGTTCAAAAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGA  348

Query  181  ATTTCCAATCCGTATGGGGATCCTAATATTCTTGCAGAATTTATAGCTGGACAATTAAAA  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  349  ATTTCCAATCCGTATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAA  408

Query  241  AATCGCGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  409  AATCGCGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAAT  468

Query  301  ACAAAAGGAATTCAAGTACAAATTGCA  327
            |||||||||||||||||||||||||||
Sbjct  469  ACAAAAGGAATTCAAGTACAAATTGCA  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5