BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475632
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65380.1 | Symbols: CLV2, AtRLP10 | Leucine-rich repeat (LRR... 3615 0.0
> AT1G65380.1 | Symbols: CLV2, AtRLP10 | Leucine-rich repeat (LRR)
family protein | chr1:24286826-24289249 FORWARD LENGTH=2424
Length=2424
Score = 3615 bits (1957), Expect = 0.0
Identities = 2276/2431 (94%), Gaps = 18/2431 (1%)
Strand=Plus/Plus
Query 1 GCTTCACTCTCCATTGCAAAAGAGAGGTCGCTGCGATTTCTGCAATTCACCCCTGAAACC 60
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 GCTTCACTCTCCATTGC-AAAGAGAGGTCTCTGCGATTTCTGCAACTCACCCCTGAAACC 59
Query 61 TTCTCAATTTACTTCAACTGCCACTATACCT--AAACTTCATCTTTCTCCTTTGAGCTAT 118
|||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 60 TTCTTAATTTACTTCAACTGCCGCTATACCTAAAAACTTCATCTTTCTCCTCTGAGCTAT 119
Query 119 GATAAAGATTGCAGATTTCActctcttcttcctcttcttcttcgtcttctctcCCTCGTT 178
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 120 GATAAAGATTGCAGATTTCACTCTCTTCTT-CT-TT-ATCTTCGTCTTCTCTCCCTCGTT 176
Query 179 GCTTCTAGCTCAATCTCAGCTTCCCAATATCGACCCACAAGACAAAGCTTCTTTATTGAT 238
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 177 GCCTCTAGCTCAATCTCAGCTTCCCGATCTCGACCCACAAGACAAAGCTTCTTTATTGAT 236
Query 239 ATTCAGAGTTTCGATTCACGACCTAAATCGAAGCTTATCGACATGGTACGGCTCATCGTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATTCAGAGTTTCGATTCACGACCTAAATCGAAGCTTATCGACATGGTACGGCTCATCGTG 296
Query 299 TTCTAACTGGACAGGTCTAGCTTGTCAGAATCCGACCGGAAAAGTTCTCTCTCTCACTTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 TTCTAACTGGACAGGTCTAGCTTGTCAGAATCCGACCGGAAAAGTTCTCTCCCTCACTTT 356
Query 359 ATCTGGTCTGAATCTCTCCGGGCAGATTCACCCATCTCTTTGTGAGCTCTCTTCTCTTCA 418
||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 357 ATCCGGTCTGAATCTCTCCAGTCAGATTCACCCATCTCTTTGTAAGCTCTCTTCTCTTCA 416
Query 419 AAGCTTGGACCTTTCTCACAACAATTTCTCTGCAAACATTCCTTCTTGCTTCGGTTCGTT 478
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 417 AAGCTTGGACCTTTCTCACAACAACTTCTCTGGAAACATTCCTTCTTGCTTCGGTTCGTT 476
Query 479 GCGTAATCTTAGGACACTTAATCTTAGTCGTAATAGtttttttGGTTCGATTCCTGCCTC 538
|||||||||||||||||||||||||||||| ||||| || |||||||||| || ||| |
Sbjct 477 GCGTAATCTTAGGACACTTAATCTTAGTCGGAATAGATTCGTTGGTTCGATACCCGCCAC 536
Query 539 ATTTCTGAGTCTTAAGGAGCTTAGAGAAGTTGTTCTAAGTGAGAATAGAGATTTGGGTGG 598
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 537 ATTTGTAAGTCTTAAGGAGCTTAGAGAAGTTGTTCTAAGTGAGAATAGAGATTTAGGCGG 596
Query 599 TGTGATTCCTCATTGGTTTGGGGGTTTCTCGATGATTCTTGAGAGTGTTGATTTAAGTTT 658
|||| | |||||||||||||| |||||| |||| ||||||||| |||||||| |||||
Sbjct 597 TGTGGTCCCTCATTGGTTTGGTAATTTCTCAATGAATCTTGAGAGAGTTGATTTTAGTTT 656
Query 659 CTGCTCGTTTCTTGGAGAATTACCTGAGAGTTTACTGTATTTGAAGTCTCTCAAGTACTT 718
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTGCTCGTTTGTTGGAGAACTACCTGAGAGTTTACTGTATTTGAAGTCTCTCAAGTACTT 716
Query 719 GAATCTCGAGAGCAATAACTTGACTGGTACACTTAGAGATTTTCAGCAGCCATTGGTGGT 778
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 GAATCTTGAGAGCAATAACATGACTGGTACACTCAGAGATTTTCAGCAGCCATTGGTGGT 776
Query 779 TCTTAATCTTGCTGCAAATCGGTTTACGGGTACACTGCCTTGTTTCTACGCCTCTCGTCC 838
||||||||||||| |||||| |||| | ||||| || |||||||||||||||||||||||
Sbjct 777 TCTTAATCTTGCTTCAAATCAGTTTTCCGGTACGCTACCTTGTTTCTACGCCTCTCGTCC 836
Query 839 TTCTCTCAGTGTTCTGAATCTAGCTGAGAACTCTTTGGTTGGTGGATTACCTTCTTGTTT 898
||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 837 GTCTCTTAGTATTCTGAATATAGCTGAGAACTCTCTGGTTGGTGGATTACCTTCTTGTTT 896
Query 899 GGGTTCTTTAAAAGAGCTGAGTCATTTAAATCTGTCCTTCAATGGATTTAACTACGAGAT 958
||||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||
Sbjct 897 GGGTTCTTTAAAAGAGCTGAGTCATTTGAATCTATCTTTCAATGGCTTCAACTACGAGAT 956
Query 959 ATCTCCGAGGCTTATGTTTTCGGAGAAGCTTGTGATGCTGGACTTGAGTCACAACGGGTT 1018
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 957 ATCTCCTAGGCTTATGTTTTCAGAGAAGCTTGTGATGTTGGACTTGAGTCACAACGGGTT 1016
Query 1019 TTCAGGTCGTCTTCCTAGTAGAATATCGGAAACAACTGAGAAACTGGGTTTAGTTCTTCT 1078
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 1017 TTCAGGTCGTCTTCCTAGTAGAATCTCGGAAACAACTGAGAAATTGGGTTTGGTTCTTCT 1076
Query 1079 TGACCTCTCTCACAATAGGTTTTCTGGTGATATACCGTTGAGGATTACCGAGTTGAAGAG 1138
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1077 TGACCTCTCTCACAATAGCTTTTCTGGTGATATACCGTTGAGGATCACAGAGTTGAAGAG 1136
Query 1139 TTTACAAGCATTGCGTCTCTCTCACAATCTTTTAACGGGAGATATCCCGGCTAGAATTGG 1198
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1137 TTTACAAGCATTGCGTCTCTCTCACAATCTTTTAACTGGAGATATTCCTGCTAGAATTGG 1196
Query 1199 GAATCTGACATATCTCCAGGTTATTGATCTTTCCCATAACTCATTAACCGGCTCAATACC 1258
|||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||
Sbjct 1197 TAATCTGACATATCTCCAGGTCATTGATCTTTCCCACAACGCGTTAACCGGCTCAATACC 1256
Query 1259 TCTCAACATTGTTGGTTGCTTTCAGTTGCTTGCTCTGATGATTAGTAATAACAATCTCTC 1318
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1257 TCTCAACATTGTTGGTTGCTTTCAGTTACTTGCTCTGATGATAAGTAACAACAATCTCTC 1316
Query 1319 GGGCGAAATACAACCCGAGCTTGATGCGTTGGACAGTTTGAAGATACTGGACATAAGCCA 1378
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |
Sbjct 1317 TGGCGAAATACAACCCGAGCTTGATGCGTTGGATAGTCTAAAGATACTGGACATAAGCAA 1376
Query 1379 CAACCAGATTTCGGGTGAGATACCGCTTACTTTGGCTGG-CATGAAGTCTCTAGAGATTG 1437
|||||| || || |||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1377 CAACCATATATCCGGTGAGATCCCGCTTACTTTAGCTGGTC-TGAAGTCTCTAGAGATTG 1435
Query 1438 TGGATATCAGTTCCAATAACCTCTCAGGAAACCTGAATGAAGCCATTACCAAATGGTCCA 1497
||||||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1436 TGGATATAAGTTCCAACAACCTCTCGGGGAACCTTAATGAAGCCATTACCAAATGGTCCA 1495
Query 1498 ACCTCAAATATCTCTCTCTTGCCCGGAACAAATTTAGTGGAACACTTCCTTCTTGGTTGT 1557
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 ACCTCAAGTATCTTTCTCTTGCCCGGAACAAGTTTAGTGGAACACTTCCTTCTTGGTTGT 1555
Query 1558 TCAAGTTCGACAAAATCCAAATGATCGACTACTCCAGCAACAGATTCTCTTGGTTCATAC 1617
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 TCAAGTTTGACAAAATCCAAATGATTGACTACTCCAGCAACAGATTCTCTTGGTTCATAC 1615
Query 1618 CAGACGATAACTTAAACAGCACACGTTTCAAAGATTTTCAGACCGGTGGAGATGAAAGAT 1677
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 1616 CAGACGATAACTTAAACAGCACACGCTTCAAAGATTTTCAGACCGGTGGAGGTGAAGGAT 1675
Query 1678 TTGCAGAGCAACCAGGAAAAGTAGAGATCAAAATATCAGCAGCTGTGGTTGCTAAAGACG 1737
|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1676 TTGCTGAGCCACCAGGAAAAGTAGAGATCAAAATATCAGCAGCTGTTGTTGCTAAAGATG 1735
Query 1738 AACTAAGCTTCAGCTACAATCTATTATCCATGGTTGGGATTGATCTTTCTGACAATCTAT 1797
|| |||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1736 AATTAAGTTTCAGCTACAATCTATTGTCTATGGTTGGGATCGATCTTTCTGACAATCTAT 1795
Query 1798 TACACGGAGAGATCCCAGAAGCTTTGTTCAGACAGAAGAATATCGAGTACTTGAACTTAT 1857
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1796 TACATGGAGAGATCCCAGAAGCTTTGTTCAGACAGAAGAATATTGAGTACTTGAACTTGT 1855
Query 1858 CCTACAACTTCCTTGAAGGTCAGCTTCCACGTCTAGAGAAGCTGCCAAGATTAAAGGCTT 1917
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1856 CCTACAACTTCCTTGAAGGTCAGCTTCCACGTCTAGAGAAGCTGCCAAGGTTAAAGGCCT 1915
Query 1918 TAGATCTTTCACACAACTCTCTGTCAGGTCAAGTCACTGGAAACATCTCGGCTCCTCCAG 1977
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1916 TAGATCTTTCACACAACTCTCTGTCAGGTCAAGTCATTGGAAACATCTCAGCTCCTCCAG 1975
Query 1978 GACTGACCCTACTGAATCTATCTCACAACTGTTTCTCTGGAATCATTACCGAGAAAGAAG 2037
|||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1976 GACTAACCCTACTGAACCTATCGCACAACTGTTTCTCTGGTATCATTACCGAGAAAGAAG 2035
Query 2038 GGCTCGGAAAGTTTCCAGGCGCTTTGGCTGGAAATCCGGAACTGTGTGTGGAATCTCCTG 2097
||||||| ||||||||||| || ||||| |||||||||||||||||||||||| |||| |
Sbjct 2036 GGCTCGGGAAGTTTCCAGGGGCGTTGGCCGGAAATCCGGAACTGTGTGTGGAAACTCCCG 2095
Query 2098 GAAGCAAGTGTGACCCGGCAAATATTGATGCGTCACATGAGGAAATATATCAAAACGAAT 2157
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 2096 GAAGCAAGTGTGACCCGGCAAACATTGATGCATCACAAGAGGAAATATATCAAAACGAAT 2155
Query 2158 TGGTGGAAGGACCGATATCGATTTGGATATTCTGCTTAAGCGCGTTTATTAGCTTCGATT 2217
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2156 TGGTGGAAGGACCGATATCTATTTGGATATTCTGCTTAAGTGCGTTTATTAGCTTCGATT 2215
Query 2218 TTGGAGTGTTAGGTATCTTTTGCTCAGCTCGTGCTCGTAGTTATATTCTTCAGACCAAAG 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TTGGAGTGTTAGGTATCTTTTGCTCAGCTCGTGCTCGTAGTTATATTCTTCAGACCAAAG 2275
Query 2278 CTTAACTCCAAAGATTGATTGATGTATATTCAGTTGTAACACACGCA-GTATGTTGTTGG 2336
|||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2276 CTTAACTCCAGAGACTGATTGATGTATATTCAGTTGTAACACATGCATGTATGTTGTTGG 2335
Query 2337 TCTGAGATGTGAAGTGGAAATGCTCGCTTTTAACTAAAATGTTGGTTTTATCTCCCAAAC 2396
|||||| ||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 2336 TCTGAGCTGTGAAGTGGAAATGCTCGCTTTTAACTAAA--GTC--T-----CTCCCAAAT 2386
Query 2397 GTTGTTACTTGTGTATATAGTTTGACCGGTT 2427
|||||||||||||||||||||||||||||||
Sbjct 2387 GTTGTTACTTGTGTATATAGTTTGACCGGTT 2417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120682110180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5