BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475633
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5 |... 1812 0.0
> AT1G65390.1 | Symbols: ATPP2-A5, PP2-A5 | phloem protein 2 A5
| chr1:24292478-24294631 FORWARD LENGTH=1389
Length=1389
Score = 1812 bits (981), Expect = 0.0
Identities = 1222/1338 (91%), Gaps = 18/1338 (1%)
Strand=Plus/Plus
Query 1 TCCCAACCAA-ACAGATAAACACATTTTCAAATTCAAACAAGAATCTATCAAAC-TCCTT 58
|||||||||| | |||||||||| || |||||||||| |||||| |||||||| | |||
Sbjct 3 TCCCAACCAAGA-AGATAAACACCTTAGCAAATTCAAAGAAGAATATATCAAACAT-CTT 60
Query 59 TTGTGTCTAAGAAAAAAGCTCTCTGATAATGTCGGGAGCATCTTCTGTTTCTTCTATTTG 118
|||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTGTTTCTAAGAAATAAGCTCTCTGATTATGTCGGGAGCATCTTCTGTTTCTTCTATTTG 120
Query 119 TTCTTCTAATGTATCATTGATCCCTACGGGACCTCAAGTGTTCATCAATTTCCGAGGAAA 178
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 121 TTCCTCTAATGTATCATTGATCCCTACGGGACCTCAAGTGTTCATCAATTTCCGGGGGAA 180
Query 179 AGATTTACGAAAAGGTTTCCTCAGCTTTCTTTCGCCTGCTTTaaaaaaaGAAAAGATCAA 238
||||||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||||
Sbjct 181 AGATTTACGAAAAGGCTTCATGAGCTTTCTTAAGCCTGCTTTGAAAAAAGAAAAGATCAA 240
Query 239 CGTGTTTATAGACGAGCAAGAGGAAAGGGGCAAATACCTAATCAGTCTGTTTAATACGAT 298
||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 241 CGTGTTTATTGACGAACAAGAGGAGAGGGGCAAATACCTAATCAGTCTTTTTGATACGAT 300
Query 299 AGGGGAGTCGAAAATCGCTTTGGTTATCTTTTCTGAGGGATACTGCGAGTCACATTGGTG 358
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 AGGTGAGTCGAAAATCGCTTTGGTTATCTTTTCTGAAGGATACTGCGAGTCACATTGGTG 360
Query 359 TATGGACGAGCTGGT-AACAATCAAGGAATACATGGATAAAAACAGACTCAAAATCATTC 417
||||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 361 TATGGACGAGCTGGTGAA-AATCAAGGAATACATGGATCAAAACAGACTCATAATCATTC 419
Query 418 CAATATTCTATAGGCTTGAGCTCGACGTGGTGAAAGATCTTACAGGTAAATTCGGCAATA 477
|||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| ||| |||
Sbjct 420 CAATATTCTACAGGCTTGATCTCGATGTGGTAAAAGATCTTACAGGAAAATTTGGCGATA 479
Query 478 ATTTCTGGAATATGGTAGATAAATATCAACCTGAACCAGAGAAA-CTCCACAAATGGACG 536
|||| ||| || |||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 480 ATTTTTGGGATTTGGTAGATAAATATCAACCTGAACCA-AAAAAGCTCCATAAATGGACG 538
Query 537 GAAGCTTTGTTCTCTGTTTGCCAATTGTTTGCCTTGATCTTACCAAAACACAGTGACACT 596
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 539 GAAGCTTTGTTCTCTGTTTGCGAATTGTTTTCCTTGATCTTACCAAAACACAGTGACATT 598
Query 597 TCCGATAGAGATTTCGTAAAGGT-AATCGTCAAGGCGGTTAAAAAAGTGCAGCGGAATTT 655
|| ||||||||||| ||||| || |||||||||||| ||||||||||||||| ||||||
Sbjct 599 TCGGATAGAGATTTTGTAAA-GTCAATCGTCAAGGCTGTTAAAAAAGTGCAGAAGAATTT 657
Query 656 CTCCCAAGGAAGAAATGGAGAAATAGGAGATCAAGGTTTCTTGA-TCCCTACAAGTAAAC 714
|| |||| |||||||||||||||||| | |||||| |||| | | ||||| || ||||||
Sbjct 658 CTTCCAACGAAGAAATGGAGAAATAGAATATCAAGATTTC-TCAGTCCCTGCATGTAAAC 716
Query 715 TCACTATCACTATGCACGAGTCACCAAATGAGGAAGCTGTTCAAGTTTCGGTGCTAAATG 774
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 717 TCACTATCACTATGCACGAGTCACCAAATGAGGAAGCCGTTCAAGTTACGGTGCTAAATG 776
Query 775 AATTTTACCAGATGAGGAATCAGTCACCAGGGCCATCACACGAGGTCATAAAATTT-GCT 833
||||||||||||||| |||||||||||||| ||| ||| ||||| || ||| ||| | |
Sbjct 777 AATTTTACCAGATGAAGAATCAGTCACCAGTGCCCTCATACGAGTTC--AAATTTTGGGT 834
Query 834 -GTCCTTACGAGACCGAAGGGTAACGTTTTCATGATTGACGCAAGGGATCTTTCCATTGA 892
| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 835 CGACCTTACGAGACCAAAGGGTAACGTTTTCATGATTGACGCAAGAGATCTTTCCATTGC 894
Query 893 ATGGTCAGAGAACTCCAACCATTGGACCTGGCTCCCTCTCCCAAACCAAAAATCAAATGA 952
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 895 ATGGTCAGAGGACTCCAACCATTGGACCTGGCTCCCTCTCCCAAACCAAAATTCAAATGA 954
Query 953 ATCGGTCG-TGGAAATTGCGTTTTTGAAAAGAGCAAGCTGGCTAGACATAGCTGGAAAGT 1011
||| || | |||||||||| ||||||||||| || |||||||||||| ||||||||||||
Sbjct 955 ATCAGT-GATGGAAATTGCATTTTTGAAAAGTGCTAGCTGGCTAGACGTAGCTGGAAAGT 1013
Query 1012 TTGACACACGATATTTGTCCCCGAGGACAAGGTATGAGGTGGTGTTTGTGGTGAAGTTGG 1071
||||||| ||||||||| |||||||||||||||| ||||||||||| || |||||||| |
Sbjct 1014 TTGACACTCGATATTTGACCCCGAGGACAAGGTACGAGGTGGTGTTCGTAGTGAAGTTAG 1073
Query 1072 AATACACATTCGAATGGGAGACACCAGTGAAGTTAAAGCTGGACTTGCCCAATACTTGGG 1131
|||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||
Sbjct 1074 AATACACATTCGAATGGGAGACACTAGTGAAGCTAAAGCTAGACTTGCCGAATACTTGGG 1133
Query 1132 AGAAACCGCAAGAACAAAGTGTGGACATGTTCGATTATATAAGTAACCAATGGCTCGAAA 1191
|||||||||||||||| |||||||||||||| || || |||||| ||||||||||||| |
Sbjct 1134 AGAAACCGCAAGAACAGAGTGTGGACATGTTTGACTACATAAGTGACCAATGGCTCGATA 1193
Query 1192 TTTCGGTTGGGGAGTTCACCACATCGATGAAAAACGTTGGGGAAATCTCTTTTGCAATGT 1251
|| | ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1194 TTCCAGTTGGAGAGTTCACCACATCGAAGAAAAACGTCGGGGAAATCTCTTTTGCAATGT 1253
Query 1252 ACGAACACGAGTGCCAACTGTGGAAGTCAGGGCTCTTCGTCAAAGGTGTTACAATTCGTC 1311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1254 ACGAACACGAGTGCCAACTGTGGAAGTCAGGCCTCTTCGTCAAAGGTGTTACAATTCGTC 1313
Query 1312 CCAAATTCTAAGTTATTT 1329
|||||| |||||| ||||
Sbjct 1314 CCAAATACTAAGTCATTT 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5