BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475635
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65410.1 | Symbols: ATNAP11, TGD3, NAP11 | non-intrinsic ABC... 1657 0.0
AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF5... 147 3e-34
> AT1G65410.1 | Symbols: ATNAP11, TGD3, NAP11 | non-intrinsic ABC
protein 11 | chr1:24295169-24297595 FORWARD LENGTH=1494
Length=1494
Score = 1657 bits (897), Expect = 0.0
Identities = 962/994 (97%), Gaps = 2/994 (0%)
Strand=Plus/Plus
Query 44 GTTCTTCTTCTGGTCCGTCCATCGTTGTACCAAGAAGGAGTTTTATCTCGTTTCGTCGGA 103
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 258 GTTCTTCTTCTGTTCAGTCCATCGTTGTACCAAGAAGGAGTCTTATCTCGTTTCGTCGGA 317
Query 104 AAGTCTCTTGCTGTTCCATAGCCCCACCTCAGAACCTGGACAACGATGCCACCAAATTCG 163
||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 318 AAGTCTCTTGCTGTTGCATAGCTCCACCTCAGAACTTGGACAACGATGCCACCAAATTCG 377
Query 164 ATAGTCTTACCAAGTCTGGAGGAGGTATGCGTAAACAGCGAGAGCTTGAGAATGATTCTG 223
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 378 ATAGTCTTACCAAGTCTGGAGGAGGTATGTGTAAAGAGCGAGGGCTTGAGAATGATTCTG 437
Query 224 ATGTTCTTATAGAATGTCGAGATGTCTACAAATCGTTTGGGGACAAACATATCTTGAAAG 283
|||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 438 ATGTTCTTATTGAATGTAGAGATGTCTATAAATCGTTTGGGGAGAAACATATCTTGAAAG 497
Query 284 GTGTTAGCTTTAAGATTAGACATGGTGAAGCTGTTGGGGTGATCGGTCCTTCTGGGACTG 343
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 498 GTGTTAGCTTTAAGATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTG 557
Query 344 GAAAATCAACCATTTTAAAGATCATGGCTGGTCTTCTTGCTCCAGACAAGGGAGAAGTTT 403
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 558 GAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGGGAGAAGTTT 617
Query 404 ATATACGAGGaaaaaaaCGAGCTGGTTTGATAAGTGATGAGGAAATATCAGGACTTCGTA 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATATACGAGGAAAAAAACGAGCTGGTTTGATAAGTGATGAGGAAATATCAGGACTTCGTA 677
Query 464 TTGGCCTGGTATTTCAGAGTGCAGCTCTCTTTGATTCTCTATCAGTTCGTGAAAATGTTG 523
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 678 TTGGCCTGGTATTTCAGAGTGCAGCTCTCTTTGATTCACTATCAGTTCGTGAAAATGTTG 737
Query 524 GTTTTCTACTTTATGAAAGATCAAAAATGTCCGAGAATCAAATATCTGAGCTTGTGACAC 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTTTTCTACTTTATGAAAGATCAAAAATGTCCGAGAATCAAATATCTGAGCTTGTGACAC 797
Query 584 AAACCTTGGCAGCTGTTGGTTTGAAGGGGGTTGAGAATCGATTACCTTCTGAGCTATCTG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AAACCTTGGCAGCTGTTGGTTTGAAGGGGGTTGAGAATCGATTACCTTCTGAGCTATCTG 857
Query 644 GTGGAATGAAGAAAAGGGTTGCTTTAGCTCGTTCACTAATTTTTGATACAACGAAAGAGG 703
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 858 GTGGAATGAAGAAAAGGGTTGCTTTAGCTCGTTCACTAATTTTTGATACAACAAAAGAGG 917
Query 704 TCATAGAGCCAGAGGTGCTTTTGTACGATGAGCCAACTGCTGGACTTGATCCAATTGCAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCATAGAGCCAGAGGTGCTTTTGTACGATGAGCCAACTGCTGGACTTGATCCAATTGCAT 977
Query 764 CAACTGTAGTTGAAGATCTTATACGGTCTGTTCACATGACGGACGATGATGCAGTTGGAA 823
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 978 CAACTGTAGTTGAAGATCTTATACGGTCTGTTCACATGACAGACGAAGATGCAGTTGGAA 1037
Query 824 AACCTGGAAAAATTGCCTCTTATCTGGTTGTTACCCATCAACATAGCACCATTCAAAGAG 883
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1038 AACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAG 1097
Query 884 CTGTGGACAGGTTATTGTTTCTGTACGAAGGAAAGATCGTTTGGCAAGGAATGACACATG 943
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1098 CTGTAGACAGGTTATTGTTTCTGTATGAAGGAAAGATCGTTTGGCAAGGAATGACACATG 1157
Query 944 AATTTACAACCTCAACAAATCCAATAGTTCAACAGTTTGCTACAGGCAGCCTCGATGGAC 1003
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AATTCACAACCTCAACTAATCCAATAGTTCAACAGTTTGCTACAGGCAGCCTCGATGGAC 1217
Query 1004 CAATCAGATACTAGCGGAGGGAA-CGCAAGCCTA 1036
|||||||||||||| ||||| || | | ||||||
Sbjct 1218 CAATCAGATACTAGGGGAGGCAAAC-CGAGCCTA 1250
Score = 207 bits (112), Expect = 2e-52
Identities = 145/160 (91%), Gaps = 5/160 (3%)
Strand=Plus/Plus
Query 1082 GATTCTACTTGTAAACACTCTTTGATCTTAGATGCATAGATCAGGAAAGCATTGTAAGTT 1141
||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1334 GATGCTACTTGTAAACACTATTTTATCTTAGATGCATAGATCAGAAAAGCATTGTAAGTT 1393
Query 1142 GAGATATCATTACGCATCAATGAGAA---GGTTTAATGTGCCAAGAACAAGACCTGCATT 1198
||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1394 GAGATTTCATTATGCATCAATGAGAATCTGGTTTAATGTGCCAAGAACAAGACCTGCATT 1453
Query 1199 CTCAGACGTATTCC--AACAAAACTGAAACTTTTAATTGA 1236
|||| || ||| || ||||||| ||||||||||||||||
Sbjct 1454 CTCAAACATATACCCCAACAAAAATGAAACTTTTAATTGA 1493
> AT1G65420.1 | Symbols: NPQ7 | Protein of unknown function (DUF565)
| chr1:24297480-24298570 REVERSE LENGTH=979
Length=979
Score = 147 bits (79), Expect = 3e-34
Identities = 104/115 (90%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 1127 AAAGCATTGTAAGTTGAGATATCATTACGCATCAATGAGAA---GGTTTAATGTGCCAAG 1183
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 979 AAAGCATTGTAAGTTGAGATTTCATTATGCATCAATGAGAATCTGGTTTAATGTGCCAAG 920
Query 1184 AACAAGACCTGCATTCTCAGACGTATTCC--AACAAAACTGAAACTTTTAATTGA 1236
||||||||||||||||||| || ||| || ||||||| ||||||||||||||||
Sbjct 919 AACAAGACCTGCATTCTCAAACATATACCCCAACAAAAATGAAACTTTTAATTGA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5