BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475649
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 488 1e-137
> AT1G65486.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G65490.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:24349523-24350180 FORWARD LENGTH=326
Length=326
Score = 488 bits (264), Expect = 1e-137
Identities = 300/317 (95%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGATGTCACCAAATATCGCTGCATTTGTGTTACCAATGCTTCTTGTACTTTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTTGATGTCACCAAATATCGCTGCATTTGTGTTACCAATGCTTCTTGTACTTTTC 60
Query 61 ACTATTGCCTCTCAAGTTGAAGTTGTGGAATCTACAGGCCGCAAACTTTTGTGGGGGTTT 120
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 61 ACTATTTCCTCTCAAGTTGAAGTTGTGGAATCTACAGGCCGAAAACTTTCGTGGGCGTTT 120
Query 121 AACGGAGCACCTATCGTATATACCCCACCCTCAAGTTCATGTGGAGGTTCTCCGGCAGCA 180
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AACGGAGCACCTATCGTATTTACTCCACCCTCAAGTTCATGTGGAGGTTCTCCGGCAGCA 180
Query 181 ACAATGGCTTCCGAGTGGATGCCAAACCGACCTTGCAGACGTAGC-CGTCCTCCCGGAAC 239
|||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||
Sbjct 181 GTAATGGCTTCCGAGTGGATGCCACGCCGACCATGCAGACGTA-CTCGTCCTCCCGGAAC 239
Query 240 TAATATCCCTGTTTCTCAATCTCCTTAATACTCACCTAATAATTCGAGTTTGTGTCAGGA 299
||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 240 TAACATCCCTGTTTCTCAATCTCCTTAATACTCACCTGA-ACTTCGAGTTTGTGTCAGGA 298
Query 300 TTTTCAAGTTATATCCT 316
|||||||||||||||||
Sbjct 299 TTTTCAAGTTATATCCT 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5