BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475650

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   538    1e-152


> AT1G65490.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G65486.1); 
Has 23 Blast hits to 23 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24354771-24355351 
FORWARD LENGTH=464
Length=464

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 367/401 (92%), Gaps = 16/401 (4%)
 Strand=Plus/Plus

Query  1    AATATTGTTGCACTTGTGTTACCTCTACTTCTTATACTTTTCACTCTCTCCTCTCAAGTT  60
            |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct  40   AATATTGTCGCACTTGTGTTACCACTACTTCTTATACTTTACACTCTTTCCTCTCAAGTT  99

Query  61   GAAGTCGTGGAATCTACAGGGCGTAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  100  GAAGTCGTGGAATCTACAGGGCGCAAACTTGCGTTTTGGGGAAATCCTATCGTGTGGACT  159

Query  121  CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTTCTTCTTCCAAGTGGACG  180
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  160  CCACACTCAAATTCATGTGGAGGTTCTCCAGCATCAGTATTTGCTTCTTCCAAGTGGACG  219

Query  181  ACAGGCCAACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATCCCTGTTTCTGATCAA  240
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  220  ACAGGCCGACCATGCAGACGTAGTCGTCCTCCAGGAACTAATATTCCTGTTTCTGATCAA  279

Query  241  TCTCCCTA--A-T---A-----AGTTACTCTGTGTTAGAATTTTGAAGTATCTGTGGTTT  289
            ||||| ||  | |   |     |||||||||||||| ||||||| |||||| ||||||||
Sbjct  280  TCTCCATAGTACTTTGAGTTTGAGTTACTCTGTGTTCGAATTTTAAAGTATATGTGGTTT  339

Query  290  TCTGTTTTAGTTTCCTGTCTCAACTCTCAAGTGTAGAGGAATGTTATCTCCTACTATGAA  349
            |||||||||||||| ||||||||||||||||||||||||||||||||   |||||||| |
Sbjct  340  TCTGTTTTAGTTTCGTGTCTCAACTCTCAAGTGTAGAGGAATGTTATAAACTACTATGCA  399

Query  350  TAAATGAAGGAACTAATACTTATGATGGTCAATT-ACTAAT  389
             |  ||||||||||||||||||||||||| | || ||||||
Sbjct  400  -A--TGAAGGAACTAATACTTATGATGGT-ATTTTACTAAT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18347728385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5