BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475652
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), d... 1170 0.0
> AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3),
delta(2)-enoyl CoA isomerase 1 | chr1:24361032-24361993 REVERSE
LENGTH=962
Length=962
Score = 1170 bits (633), Expect = 0.0
Identities = 709/746 (95%), Gaps = 4/746 (1%)
Strand=Plus/Plus
Query 1 AGAGAAATGTGTTCACTAGAGAAACGTGGTCGACTTTTCATACTAAAACTCACCGGCGAC 60
||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 95 AGAGAAATGTGTTCATTAGAGAAACGTGATCGTCTTTTCATACTAAAACTCACCGGCGAC 154
Query 61 GGCGAACACCGTCTAAACCCAACCTTACTCGACTCTCTCCGCTCCACCATCAACAAAATC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 155 GGCGAACACCGTCTAAACCCAACCTTACTCGACTCTCTCCGCTCCACCATCAACCAAATC 214
Query 121 CGATCAGATCCATCATCTTCAAAATCAGTCCTAATCACAACATCCGATGGTAAATTCTTC 180
|||||||||||||||| |||| ||||||| || ||||||||||| |||||||||||||||
Sbjct 215 CGATCAGATCCATCATTTTCACAATCAGTACTCATCACAACATCAGATGGTAAATTCTTC 274
Query 181 TCCAACGGTTACGATCTCGCTTTAGCCGAGTCAAATCCTTCTCTCTCTGTTCTAATGGAC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 275 TCCAACGGCTACGATCTCGCTTTAGCCGAGTCAAATCCTTCTCTCTCTGTTGTAATGGAC 334
Query 241 GCAAAACTTAGATCTCTAA-TCGCCGATCTGATCTCTCTTCCTATGCCAACAATCGCCGC 299
|||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||
Sbjct 335 GCAAAACTTAGATC-CTTAGTCGCCGATCTAATCTCTCTTCCTATGCCAACAATCGCCGC 393
Query 300 CGTCACTGGTCACGCCTCCGCCGCGGGATGTATTTTAGCGATGAGTCATGATTATGTGTT 359
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 394 CGTCACAGGTCACGCTTCCGCCGCGGGATGTATTTTAGCGATGAGTCATGATTATGTATT 453
Query 360 GATGCGTCGTGATAGAGGTTTTTTGTATATGAGTGAATTGGATATTGAGTTAATAGTTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 454 GATGCGTCGTGATAGAGGTTTTTTGTATATGAGTGAATTGGATATTGAGTTGATAGTTCC 513
Query 420 GGCGTGGTTTATGGCTGTTATTAGGA-TGAAGATTGGTTCTCCGGCGGCGAGAAGGGATG 478
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 514 GGCGTGGTTTATGGCTGTTATTAGGGGT-AAGATTGGTTCTCCGGCGGCCAGAAGGGATG 572
Query 479 TGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTAAGATGGGGATTGTTGATT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTAAGATGGGGATTGTTGATT 632
Query 539 CGGCGTATGATAGTGCGGTGGAGACGGTTGAAGCCGCCGTTAAGTTAGGTGAGGAGATTA 598
||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 CGGCGTATGGTAGTGCGGCGGAGACGGTTGAAGCCGCCATTAAGTTAGGTGAGGAGATTG 692
Query 599 TTCAGCGTGGAGGTGATGGACACGTGTATGGTAAGATGAGAGAGACTCTTTTAAGAGAGG 658
||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 693 TTCAGAGAGGTGGTGATGGACACGTGTATGGTAAGATGAGAGAGAGTCTTTTAAGAGAGG 752
Query 659 TTCTGAGCCATACGATTGGTGAAGATGAGAGTGGTTTGAGTGTGGTGCGTAACACTGGAT 718
|||| | |||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 753 TTCTTATCCATACGATTGGTGAATATGAGAGTGGTTCAAGTGTGGTGCGTAGCACTGGAT 812
Query 719 CTAAACTTTAGAACATGTTTGTACTT 744
||||||||||||||||||||||||||
Sbjct 813 CTAAACTTTAGAACATGTTTGTACTT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5