BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475654
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65550.1 | Symbols: | Xanthine/uracil permease family prote... 2449 0.0
AT5G25420.1 | Symbols: | Xanthine/uracil/vitamin C permease | ... 795 0.0
> AT1G65550.1 | Symbols: | Xanthine/uracil permease family protein
| chr1:24367694-24370800 REVERSE LENGTH=1626
Length=1626
Score = 2449 bits (1326), Expect = 0.0
Identities = 1525/1623 (94%), Gaps = 6/1623 (0%)
Strand=Plus/Plus
Query 22 AACGGTGGTGGCAGAAACACCGGAGTAGGAAACCGGACGGAGGAGTTACAACCCCATCCG 81
|||||||||||| |||||| ||||| || |||||||||||| |||||||||||||| |||
Sbjct 7 AACGGTGGTGGCGGAAACAACGGAGCAGCAAACCGGACGGAAGAGTTACAACCCCACCCG 66
Query 82 GTGAAAGAACAACTCCCCGAAATTCAATACTGCGTCAACAGTCCTCCTCCTTGGTTTGAA 141
||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||
Sbjct 67 GTGAAAGAACAACTCCCCGGAATCCAGTACTGCGTCAACAGTCCTCCTCCTTGGCTTGAA 126
Query 142 GCGGTAGTGTTGGGTTTCCAGCATTATTTGTTGAGTCTTGGCATCACAGTTCTCATTCCA 201
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 127 GCCGTAGTGTTGGGTTTCCAGCATTACTTGTTGAGTCTTGGCATCACAGTTCTGATTCCA 186
Query 202 AGTCTATTAGTTCCACTCATGGGAGGTGG-TGATGCAGAAAAAGTTAAAGTAATACAAAC 260
||| ||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||
Sbjct 187 AGTGTATTAGTTCCACTCATGGGAGGTGGCT-ATGCAGAAAAGGTTAAAGTCATACAAAC 245
Query 261 ATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTTTGGAACTCGATTGCC 320
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 246 ATTACTGTTTGTGTCTGGATTAACAACATTGTTCCAGTCATTCTTTGGAACTCGATTGCC 305
Query 321 TGTGATAGCTGCT-GCTTCTTATGCGTATATCATACCTATCACTTCTATCATTTATTCGG 379
||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 306 TGTGATAGCTG-TAGCTTCTTATGCCTATATCATACCTATCACTTCCATCATTTATTCGA 364
Query 380 CCCGATTCACTTACTACATTGATCCTTTTGAAAGGTTCGTGAGAACAATGAGAAGCATAC 439
|||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 365 CCCGATTCACTTACTACACTGATCCTTTTGAAAGGTTTGTGCGAACAATGAGAAGCATAC 424
Query 440 AAGGAGCTCTGATTATAACCGGATGTTTCCAAGTTCTTGTCTGTTTTCTAGGCGTATGGA 499
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 425 AAGGAGCTTTGATTATAACCGGATGTTTCCAAGTTCTTATCTGTATTCTAGGCGTATGGA 484
Query 500 GAAATATTGTTAGATTGCTTAGCCCACTATCCATTGCTTCTTTGGCAACATTTACCGGAT 559
|||||||||||||||| || || ||||| ||||||||| |||||||||||||||||||||
Sbjct 485 GAAATATTGTTAGATTTCTAAGTCCACTCTCCATTGCTCCTTTGGCAACATTTACCGGAT 544
Query 560 TGGGACTCTACCACATTGGGTTCCCTTTGTTAGCAAGATGCATTGAAGTGGGACTTCCCG 619
|||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 545 TGGGACTCTACCACATCGGTTTCCCTTTGCTAGCAAGATGCGTTGAAGTGGGACTTCCCG 604
Query 620 GGTTGATCCTACTTGTTTTTATCACTCAGTATTTACCGCGTTTTCTGAAGATGAAGAAAG 679
| |||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 605 GATTGATCCTACTTATTTTTGTCACTCAGTACTTACCGCGTTTTCTGAAGATGAAAAAAG 664
Query 680 GCGCGATGATTTGGGATGGAAACAGATGTGACCGTTATGGGATGATGTTATGCATTCCAG 739
| | |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 665 GAGTGATGATTTTGGATGGAAGCAGATGTGACCGTTATGGGATGATTTTATGCATTCCAT 724
Query 740 TGGTATGGTTGTTCGCTCAGCTACTCACATCGACTGGTGTTTATGACCACAAGCCTCAAA 799
||||||||||||| ||||| || |||||||| | ||||||||||||||||||| |||| |
Sbjct 725 TGGTATGGTTGTTTGCTCAACTTCTCACATCCAGTGGTGTTTATGACCACAAGTCTCATA 784
Query 800 CTACTCAAATCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTCCTTGGATAT 859
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTCCTTGGATAT 844
Query 860 ACATACCATATCCTTTTCAATGGGGAAGCCCAACTTTCGACATCACTGATTCTTTTGCAA 919
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 845 ACATACCATATCCTTTCCAATGGGGAAGTCCAACTTTCGACATCACTGATTCTTTTGCGA 904
Query 920 TGATGGCTGCGTCTTTAGTCACTCTCTTTGAGTCGACTGGTTTGTTCTATGCATCCGCAA 979
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 905 TGATGGCTGCGTCTTTCGTCACTCTATTTGAGTCGACTGGTTTGTTCTATGCATCCGCAA 964
Query 980 GATATGGAAGCGCGACGCCAATTCCACCATCAATTGTTAGTCGTGGTACTGGCTGGCTGG 1039
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 965 GATATGGAAGCGCGACGCCAATTCCACCATCAGTTGTTAGTCGTGGTACTTGTTGGCTGG 1024
Query 1040 GAGTTGGAGTATTACTCAATGGCATGCTTGGAGGCATCACAGGGATCACAACATCAACAG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GAGTTGGAGTATTACTCAATGGCATGCTTGGAGGCATCACAGGGATCACAACATCAACAG 1084
Query 1100 AAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAG 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 AAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAG 1144
Query 1160 CTGCATTCATGCtttttttctccatttttggaaaatttggagc-ttttttCGCGTCCATA 1218
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1145 CTGCATTCATGATTTTTTTCTCCATTTTTGGAAAATTTGGAGCGTTTTTT-GCGTCCATA 1203
Query 1219 CCATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCAGCGGGA 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1204 CCATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGTGGGA 1263
Query 1279 CTTAGCTTTCTACAATTCTGCAACCTCAATAGTTTCAACACCAAATTCATTTTGGGATTT 1338
||||||| |||||||||||||||||||||||| ||||||| |||||||||| | ||||||
Sbjct 1264 CTTAGCTATCTACAATTCTGCAACCTCAATAGCTTCAACATCAAATTCATTCTCGGATTT 1323
Query 1339 TCTTTTTTCATGGCTATTTCGATCCCGCAATATTTCAGAGAATACTATAATGGAGGTTGG 1398
|| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct 1324 TCCTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAGGGTGG 1383
Query 1399 CGGTCTGATCATCGCGCAAATTGGTTGGAAGATGTGATAAGAGTGATATTCATGTCGCAT 1458
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1384 CGGTCTGATCATCACTCAAATTGGTTGGAAGATATGATAAGAGTGATATTCATGTCACAT 1443
Query 1459 ACAACAGTTGCGGCAATAATTGCAATAGTGCTTGATTGCACATTGTGTCGTGAAAGCGAT 1518
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1444 ACAACGGTTGCGGCAATAATTGCGATAGTGCTTGATTGCACATTGTGTCGTGACAGCGAT 1503
Query 1519 GAAGCCAAGAAAGATTGCGGACTCAAATGGTGGGATAAGTTTCGACTATATAATCTTGAC 1578
||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||
Sbjct 1504 GAAGCCAAGAAAGATTGCGGAATGAAATGGTGGGATAAGTTTCGACTTTACAATCTTGAC 1563
Query 1579 GTGCGAAATGATGAGTTTTACGGTCTACCTTTCGGCCTCAACAAATTCTTTCCTTCTCAT 1638
|||||||| |||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 1564 GTGCGAAACGATGAGTTTTACGGTCTACCTTGCCGCCTCAACAAATTCTTCCCTTCTCAT 1623
Query 1639 TGA 1641
|||
Sbjct 1624 TGA 1626
> AT5G25420.1 | Symbols: | Xanthine/uracil/vitamin C permease
| chr5:8838417-8841775 REVERSE LENGTH=1260
Length=1260
Score = 795 bits (430), Expect = 0.0
Identities = 522/568 (92%), Gaps = 0/568 (0%)
Strand=Plus/Plus
Query 21 CAACGGTGGTGGCAGAAACACCGGAGTAGGAAACCGGACGGAGGAGTTACAACCCCATCC 80
||| |||||||| |||||| ||||| |||||||||| ||||||||||||||||||| ||
Sbjct 42 CAATGGTGGTGGTGGAAACAACGGAGCAGGAAACCGGGCGGAGGAGTTACAACCCCACCC 101
Query 81 GGTGAAAGAACAACTCCCCGAAATTCAATACTGCGTCAACAGTCCTCCTCCTTGGTTTGA 140
||||||||||||||||| | ||||||||| || ||||||||||||||||||||| ||||
Sbjct 102 AGTGAAAGAACAACTCCCTGGAATTCAATATTGTGTCAACAGTCCTCCTCCTTGGCTTGA 161
Query 141 AGCGGTAGTGTTGGGTTTCCAGCATTATTTGTTGAGTCTTGGCATCACAGTTCTCATTCC 200
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 162 AGCGGTAGTGTTAGGTTTCCAGCATTATTTGTTGAGTCTTGGTATTACAGTTCTCATTCC 221
Query 201 AAGTCTATTAGTTCCACTCATGGGAGGTGGTGATGCAGAAAAAGTTAAAGTAATACAAAC 260
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 222 GAGTCTATTAGTTCCACTCATGGGAGGTGGTGATGCAGAAAAGGTTAAAGTAATACAAAC 281
Query 261 ATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTTTGGAACTCGATTGCC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTTTGGAACTCGATTGCC 341
Query 321 TGTGATAGCTGCTGCTTCTTATGCGTATATCATACCTATCACTTCTATCATTTATTCGGC 380
|||||| ||| | ||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 342 TGTGATCGCTTCGGCTTCTTATGCCTATATCATTCCTATCACTTCCATCATTTATTCCAC 401
Query 381 CCGATTCACTTACTACATTGATCCTTTTGAAAGGTTCGTGAGAACAATGAGAAGCATACA 440
| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 CAGATTCACTTACTACACGGATCCTTTTGAAAGGTTTGTGAGAACAATGAGAAGCATACA 461
Query 441 AGGAGCTCTGATTATAACCGGATGTTTCCAAGTTCTTGTCTGTTTTCTAGGCGTATGGAG 500
||||||||||||||| || || ||||| ||||||||||||||||| || || ||||||||
Sbjct 462 AGGAGCTCTGATTATCACTGGTTGTTTTCAAGTTCTTGTCTGTTTCCTCGGTGTATGGAG 521
Query 501 AAATATTGTTAGATTGCTTAGCCCACTATCCATTGCTTCTTTGGCAACATTTACCGGATT 560
||||||||| ||||| || ||||| || || |||||| |||||| |||||||||||||||
Sbjct 522 AAATATTGTGAGATTTCTAAGCCCTCTGTCGATTGCTCCTTTGGTAACATTTACCGGATT 581
Query 561 GGGACTCTACCACATTGGGTTCCCTTTG 588
|||||||||||||||||| |||||||||
Sbjct 582 GGGACTCTACCACATTGGTTTCCCTTTG 609
Score = 481 bits (260), Expect = 1e-134
Identities = 287/300 (96%), Gaps = 1/300 (0%)
Strand=Plus/Plus
Query 1100 AAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAG 1159
|||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 896 AAAATGTTGGACTTTTAGCAATGACTAAGGTTGGGAGTCGAAGGGTGATACAAATATCAG 955
Query 1160 CTGCATTCATGCtttttttctccatttttggaaaatttggagcttttttCGCGTCCATAC 1219
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 CAGCATTCATGCTTTTTTTCTCCATTTTTGGAAAATTTGGAGCTTTTTTTGCGTCCATAC 1015
Query 1220 CATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCAGCGGGAC 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 CATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGCGGGAC 1075
Query 1280 TTAGCTTTCTACAATTCTGCAACCTCAATAGTTTCAACACCAAATTCATTTTGGGATTTT 1339
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 TTAGCTTTCTACAATTTTGCAACCTCAATAGCTTCAACACCAAATTCATTTTGGGATTTT 1135
Query 1340 CTTTTTTCATGGCTATTTCGATCCCGCAATATTTCAGAGAATACTATAATGGAGGTTGGC 1399
||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||| |||||
Sbjct 1136 CTTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAG-TTGGC 1194
Score = 302 bits (163), Expect = 9e-81
Identities = 178/185 (96%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 671 TGAAGAAAGG-CGCGATGATTTGGGATGGAAACAGATGTGACCGTTATGGGATGATGTTA 729
|||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 611 TGAAGAAAGGAC-CGATGATTTGGGATGGAAATAGATGTGACCGTTATGGAATGATGTTA 669
Query 730 TGCATTCCAGTGGTATGGTTGTTCGCTCAGCTACTCACATCGACTGGTGTTTATGACCAC 789
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 670 TGCATTCCAGTGGTATGGTTGTTCGCTCAGCTACTCACATCGAGTGGTGTTTATGACCAC 729
Query 790 AAGCCTCAAACTACTCAAATCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACT 849
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 730 AAGCCTCAAACTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTAATCACCAACACT 789
Query 850 CCTTG 854
|||||
Sbjct 790 CCTTG 794
Score = 163 bits (88), Expect = 4e-39
Identities = 96/100 (96%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 889 CCAACTTTCGACATCACTGATTCTTTTGCAATGATGGCTGCGTCTTTAGTCACTCTCTTT 948
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 796 CCAACTTTCGACATCACTGATTCTTTTGCGATGATGGCTGCATCTTTTGTCACTCTCTTT 855
Query 949 GAGTCGACTGGTTTGTTCTATGCATCCGCAAGATATGGAA 988
|||||||||||||||||||||||||| |||||||||||||
Sbjct 856 GAGTCGACTGGTTTGTTCTATGCATCGGCAAGATATGGAA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5