BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475658
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65590.1 | Symbols: HEXO3, ATHEX1 | beta-hexosaminidase 3 | ... 3009 0.0
> AT1G65590.1 | Symbols: HEXO3, ATHEX1 | beta-hexosaminidase 3
| chr1:24385900-24391207 FORWARD LENGTH=1922
Length=1922
Score = 3009 bits (1629), Expect = 0.0
Identities = 1833/1930 (95%), Gaps = 20/1930 (1%)
Strand=Plus/Plus
Query 1 CTCCTCCatttttgctaca-gtttttttcatttgattaaaaacatttttactatttttcg 59
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCCATTTTTGCTACATTTTTTTTTC-TTTGATTAAAAACATTTTTACTATTTTTCG 59
Query 60 -ttctttgctatttcCTTGGT-ACTTAGAAG-a-aaaaaaTGAGAGGTAGAGGAGCAAAG 115
|| |||||||||||||| || ||||| ||| | |||||||||||||||| |||||||||
Sbjct 60 CTT-TTTGCTATTTCCTT-GTAACTTAAAAGAAGAAAAAATGAGAGGTAGCGGAGCAAAG 117
Query 116 ATCGCCGGCGTATTGCCGTTGTTTATGCTTTTCATCGCCGGAACAATCTCCGCCTTTGAA 175
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 ATCGCCGGCGTTTTGCCGTTGTTTATGCTATTCATCGCCGGAACAATCTCCGCCTTTGAA 177
Query 176 GACATCGAGAGGTTAAGGATTTGGCCGTTACCGGCACAAGTTAGCCACGGTGGCCGGAGA 235
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACATAGAGAGGTTGAGGATTTGGCCGTTACCGGCACAAGTTAGCCACGGTGGCCGGAGA 237
Query 236 ATGTATCTAAGTGGAGATTTCAAGCTTGTTACGGAGGGAAGCAAATATGGAGACACCTCA 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 ATGTATCTAAGTGGAGATTTCAAGCTTGTTACGGAGGGAAGCAAATATGGAGACGCCTCA 297
Query 296 GGGATTTTGAAAGAAGGATTTGATAGAATGCTTAGTATTGTGAGGCTGAGCCACGTCATC 355
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 298 GGGATTTTGAAAGAAGGATTTGATAGAATGCTTGGTGTTGTGAGGCTGAGCCACGTCATC 357
Query 356 TCCGGTGACCGGAATTCTTCAGGCTCCGGTGGATCTGCTTTGCTTCAGGGACTCCATGTC 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 358 TCCGGTGACCGGAATTCTTCAGGCACCGGTGGATCTGCTTTGCTTCAGGGACTTCACGTC 417
Query 416 ATCATCTCTTCCTCCACCGATGAGTTGGAATATGGAGCAGACGAGTCGTACAAATTAGTG 475
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCATCTCCTCCTCTACCGATGAGTTGGAATATGGAGCAGACGAGTCGTACAAATTAGTG 477
Query 476 GTTCCATCTCCAGAGAAGCCGTCTTATGCACAACTTGAGGCAAAGAGTGTTTACGGTGCG 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 478 GTTCCATCTCCAGAGAAGCCGTCTTATGCACAACTTGAGGCCAAGAGTGTTTATGGTGCA 537
Query 536 TTGCATGGTCTACAGACATTTAGCCAGTTATGTCATTTTAATTTGAAGAAAAAGGTAATA 595
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 TTGCACGGTCTACAGACATTTAGCCAGTTATGTCATTTTAATTTGAAGAAAAAGGTCATA 597
Query 596 GAGATTCTAATGACTCCATGGAATATCACAGACCAGCCTAGATTCTCTTACCGTGGCCTT 655
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 GAGATTCTAATGACTCCATGGAATATCATAGACCAGCCTAGATTCTCTTACCGTGGCCTT 657
Query 656 CTAATCGATACATCCCGACATTATTTGCCACTTCCCGTTATAAAGAACGTGATTGATTCC 715
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TTAATCGATACATCCCGACATTATTTGCCACTTCCGGTTATAAAGAACGTGATTGATTCC 717
Query 716 ATGACATATGCCAAACTTAATGTGTTACATTGGCACATTGTGGATACACAATCATTTCCT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGACATATGCCAAACTTAATGTGTTACATTGGCACATTGTGGATACACAATCATTTCCT 777
Query 776 TTAGAGATACCTTCTTATCCAAAGCTATGGAACGGTGCTTACTCTTCCTCTCAGAGATAC 835
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 778 TTAGAGATACCTTCTTACCCAAAGCTATGGAACGGCGCTTACTCTTCCTCTCAGCGATAC 837
Query 836 ACATTCGAAGACGCTGCTGAAATAGTCAATTATGCCCAGCGACGAGGGATCCATGTCTTG 895
|| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 838 ACCTTCGAAGACGCTGCTGAAATCGTCAATTATGCTCGGCGACGAGGGATCCATGTCTTG 897
Query 896 GCTGAGATTGATGTTCCAGGACATGCTCTCTCATGGGGAAAAGGATATCCTGCCTTGTGG 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 GCTGAGATTGATGTTCCAGGACATGCTCTCTCATGGGGAAAGGGATATCCTGCCTTGTGG 957
Query 956 CCCTCCAAGAATTGTCAAGAACCCCTTGACGTGAGCAGTGACTTTACATTCAAGGTCATT 1015
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 958 CCCTCCAAGAATTGTCAAGAACCACTTGACGTGAGCAGTGACTTCACATTCAAAGTCATT 1017
Query 1016 GATGGCATTCTTTCTGATTTCAGCAAGATCTTTAAGTTTAAGTTTGTCCACTTGGGAGGT 1075
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1018 GATGGCATTCTCTCTGATTTCAGCAAGATCTTTAAGTTTAAATTTGTCCACTTGGGTGGT 1077
Query 1076 GACGAAGTAAACACAACTTGTTGGTCTGCAACGCCGCGAATAGCCCAATGGCTTAAAAAA 1135
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 GATGAAGTAAATACAACTTGTTGGTCTGCAACACCGCGAATAGCCCAATGGCTTAAAAAA 1137
Query 1136 CATCGGATGAGTGAAGGAGAAGCCTATCAATATTTTGTGTTGCGGGCACAAAAAATCGCT 1195
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1138 CATCGGATGAGTGAAAAAGAAGCCTATCAATATTTCGTGTTGCGGGCGCAAAAAATCGCC 1197
Query 1196 TTGTCTCACGGATATGAAATTATCAACTGGGAAGAAACCTTCATCAATTTTGGAAGCAAA 1255
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 TTGTCTCACGGATATGAAATTATCAACTGGGAAGAGACCTTCATCAATTTTGGAAGCAAA 1257
Query 1256 TTAAACTCG-AAAACCGTGGTTCACAACTGGCTTAATACAGGACTTGTTGAGAATGTGAC 1314
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 TTAAAC-CGGAAAACCGTGGTTCACAACTGGCTTAACACAGGACTTGTTGAGAATGTGAC 1316
Query 1315 GGCCTCCGGTTTAAGGTGTATAGTTAGTAACCAAGAATATTGGTATTTGGATCATATAGA 1374
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 TGCGTCCGGTTTAAGGTGTATAGTTAGTAACCAAGAATTTTGGTATTTGGATCATATAGA 1376
Query 1375 CGCACCTTGGCAAGGCTTTTACGCAAACGAGCCACTTCAAAACATAACGGATAAAAAACA 1434
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1377 CGCACCTTGGCAAGGCTTTTACGCAAACGAGCCATTTCAAAACATAACGGATAAAAAGCA 1436
Query 1435 ACAAAGTCTAGTACTTGGTGGTGAAGTTTGCATGTGGGGTGAACATATTGATGCTTCTGA 1494
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1437 ACAAAGTCTAGTACTTGGTGGCGAGGTTTGCATGTGGGGTGAACATATTGATGCTTCTGA 1496
Query 1495 CATTGAACAAACCATTTGGCCTCGTGCTGCCGCAGCTGCAGAGCGGTTGTGGACACCCTA 1554
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1497 CATTGAACAAACCATTTGGCCTCGCGCTGCCGCAGCTGCAGAGCGGTTGTGGACACCCTA 1556
Query 1555 TGCAAAGTTGGCTAAAAATCCCAACAAGGTAACGACGAGGTTGGCTCACTTCAGATGCCT 1614
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1557 TGCAAAATTGGCTAAAAATCCCAACAATGTAACGACGAGGTTGGCTCACTTCAGATGTCT 1616
Query 1615 ATTAAATCGACGAGGTGTTGCAGCTGCACCTTTGGTTGGTGGCGGACGAGTCGTGCCTTT 1674
||| |||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1617 ATTGAATCAAAGAGGAGTTGCAGCTGCACCTTTGGTTGGTGGCGGACGAGTTGTGCCTTT 1676
Query 1675 AGAACCAGGTTCTTGTCTCGCTCAGTGATTCGAACAGATTAGCATTTTAGAATATATTAC 1734
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1677 TGAACCAGGTTCTTGTCTCGCTCAGTGATTCGAA-AGATTAGCATTGTAGAATATATTAC 1735
Query 1735 AGTCAGCAACACCTTGGTCAATTCAGGTT-AATATGAATCCCTACAATTATGGGATACTT 1793
||||||||||||||||||||||||||||| || ||||| |||||||| | |||||||||
Sbjct 1736 AGTCAGCAACACCTTGGTCAATTCAGGTTGAA-ATGAACCCCTACAAAAAAGGGATACTT 1794
Query 1794 TGAGTTTGTTTTCTTGGTTGATTTC--AGTGGTAGAATTATTTGTTCCTATTTGG-AAGT 1850
||| ||| |||||||||||||||| |||||||||| |||| ||| ||||||| || |
Sbjct 1795 TGAATTT-TTTTCTTGGTTGATTTTTTAGTGGTAGAAATATTCCTTCTTATTTGGGAA-T 1852
Query 1851 AATTGTTGCAACATTCATGTA-AAA-GGCCATACCAATTTCTGGCTTGAATAAGAATACA 1908
||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||
Sbjct 1853 AATTGTTGCAACATTCATGTATAAAAGGCCTTACCAATTTCAGGCTTGAATAAGAATACA 1912
Query 1909 TAGTTTGCAC 1918
||||||||||
Sbjct 1913 TAGTTTGCAC 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94979431140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5