BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475665
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34837.1 | Symbols: | transposable element gene | chr5:1300... 1432 0.0
AT5G28710.1 | Symbols: | transposable element gene | chr5:1075... 1201 0.0
> AT5G34837.1 | Symbols: | transposable element gene | chr5:13005694-13006653
FORWARD LENGTH=960
Length=960
Score = 1432 bits (775), Expect = 0.0
Identities = 902/960 (94%), Gaps = 21/960 (2%)
Strand=Plus/Plus
Query 1 GATTCAACGAATCCATATCATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 GATTCACCGAATCCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 62
Query 61 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 63 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTTGAACTTGGATCAGCAAATGTC 122
Query 121 CCTGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAACACCAATTG-T 179
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 123 CCTGTGTATAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACCAATTGCT 182
Query 180 ----------------TGGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGT 223
||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 183 GGGAAAAAGGGAAGAAAGGGAAGAAAGGGAAGAAAGTCAAGAAACCAAAGAGGAATTGGT 242
Query 224 CATCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCTGGTGG 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 243 CATCAACTGAAGATGTTGTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCCGGTGG 302
Query 284 TTGGCAATGAGCAAAAGGGAGCAGCGTTCTGAAAACGTATAGCAGCGTACTACAACTCAA 343
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 303 TGGGCAATGAGCAAAAGGGGGCAGCTTTCTGGGAACGTATAGCAGCGTACTACAACTCAA 362
Query 344 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAGAGGTGCTCAA 403
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 363 GTCCCAAGCTCAAAGGTGTGGAAAAGAGAGGCCACATATGTTGTAAACAAAGGTGGTCAA 422
Query 404 AAGTGAATGACGCCGTGAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAA 463
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 423 AAGTGAATGATGTTGTGAACAAGTTTGTAGGGAGCTACTTGGCTGCAAGCAAACAACAAA 482
Query 464 CAAGTGGTCAGAATGATGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATT 523
|||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 483 CAAGTGGTCAAAATGATGATGATGTGGTGTCTTTGGCACATCAGATCTTCTCAAAAGATT 542
Query 524 ATGGCTGCAAGTTTACTTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGGCTGCAAGTTTACTTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGA 602
Query 584 TTGGTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTG-ACTCT 642
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 603 TTGCTCAGTCTACTCATGGGAAAGCAAAGAGAAGAAAATGTGAAGATGACTCTGAAC-CT 661
Query 643 GTTGGCGTTGAAGACAAGGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCC 702
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 GTTGGCCTTGAAGACAAGGAAGCTCGTCCCATTGGTGTTAAGGCGGCCAAAGCCGCAGCC 721
Query 703 AAAGCCAAAGGCAAAGCCAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAAG 762
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 722 AAAGCCAAAGGAAAAGGCAAGCTAAGTCCGGATGAAGGTGAAGAAACCAATGCTTTGAAG 781
Query 763 GAGATACAAAA-TATCTGGGAGATAAAACAGAAAGATCACGCTGCCAAAGAGAAGCTAAT 821
|||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 GAGATA-AAAAGTATATGGGAGATAAAAGAGAAAGATCACGCTGCCAAAGAGAAGCTAAT 840
Query 822 CATTATTAAAGAGAAGAAAAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGAAAAACAGA 881
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 CATTATTAAAGAGAAGAAAAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAGA 900
Query 882 ATCTCTATCTGACATAGAGATTGATCTTAAGAACAAGTTAATCAATGAGTTGTTGGCTTG 941
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 901 ACCTCTATCTGACATAGAGATTGAACTGAAGAACAAGTTAATCAATGAGTTGTTGGCTTG 960
> AT5G28710.1 | Symbols: | transposable element gene | chr5:10757991-10758887
REVERSE LENGTH=897
Length=897
Score = 1201 bits (650), Expect = 0.0
Identities = 854/943 (91%), Gaps = 52/943 (6%)
Strand=Plus/Plus
Query 1 GATTCAACGAATCCATATCATCATACTTCAAGCTTTATAAACCTGTTGAACAGTCAAGAT 60
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 GATTCAACGAATTCATATCATCATACTTCAAGCTTTATAAACCTTTTGAACAGTCAAGAT 63
Query 61 GACAGTCACATTCTCCCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 120
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GACAGTCACAATCTCTCACCAAATCCATATGAATGCTTGGAACTTGGATCAACAAATGTC 123
Query 121 CCTGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAACACCAATTGTT 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 124 CCTGTGTTTAGCACTGAGTGGTCTGATGATGATCCAAGTGAAGATGAAGCACTAATTGCT 183
Query 181 GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCATCAACTGAAGATGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 184 GGGAAGAAAGGGAAGAAAGCCAAGAAACCAAGGAGGAATTGGTCATCAATTGAAGATATT 243
Query 241 GTTCTCATAAGTGGGTGGCTGAACACTTCCAAGGATCTGGTGGTTGGCAATGAGCAAAAG 300
||||||||| ||||||||||||||||||||||||||| | |||| |||||||||| ||
Sbjct 244 GTTCTCATATGTGGGTGGCTGAACACTTCCAAGGATCCGATGGTGGGCAATGAGC--AA- 300
Query 301 GGAGCAGCGTTCTGAAAACGTATAGCAGCGTACTACAACTCAAGTCCCAAGCTCAAAGGT 360
| || | | | ||||||| | || |||||| ||||||||||||
Sbjct 301 --A--AG-G----G-----G----GCAGCGT--T----CTGAAGTCCAAAGCTCAAAGGT 336
Query 361 GTGGA-AAAGAGAGGCCACATATGTTGTAAACAGAGGTGCTCAAAAGTGAATGACGCCGT 419
||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||| ||||
Sbjct 337 GTGGAGAAA-AGAGGCCACATATGTTGTAAACACATGTGATCAAAAGTGAATGACACCGT 395
Query 420 GAACAAGTTTGTAGGGAGCTACTTGGCCGCAAGCAAACAACAAACAAGTGGTCAGAATGA 479
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 396 GAACAAGTTTGTAGGGAGCTACTTGACCGCAAGCAAACAACAAACTAGTGGTCAGAATGA 455
Query 480 TGATGATGTGGTGTCTATGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 539
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TGATTTTGTGGTGTCTTTGGCACATCAGATCTTCTCGAAAGATTATGGCTGCAAGTTTAC 515
Query 540 TTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGGTCAGTCTACTCA 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 516 TTGTGAGCATGCTTGGAGGGAGCTTAGATATGATCAAAAGTGGATTGCTCAGTCTACTCA 575
Query 600 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTCTGTTGGCGTTGAAGACAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGGAAAGCAAAGAGAAGAAAATGTGAAGCTGACTCTGACTCTGTTGGCGTTGAAGACAA 635
Query 660 GGAAGCTCGTCCCATTGGTGTTAAGGCTGCCAAAGCCGCAGCCAAAGCCAAAGGCAAAGC 719
|||||||||||||||| ||||||| |||||||||||||| | || || ||||
Sbjct 636 GGAAGCTCGTCCCATTAGTGTTAAAGCTGCCAAAGCCGC--C-AA-GC-AAAG------- 683
Query 720 CAAGCTAAGTCCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAATATCTG 779
| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 684 -----T----CCGGTTGAAGGTGAAGAAACCAATGCTTTGAAGGAGATACAAAGTATCTG 734
Query 780 GGAGATAAAACAGAAAGATCACGCTGCCAAAGAGAAGCTAATCATTATTAAAGAGAAGAA 839
|||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 735 GGAGATAAAAGATAAAGATCACGCAGCGAAAGAGAAGCTAATCATTATTAAAGAGAAGAA 794
Query 840 AAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGAAAAACAGAATCTCTATCTGAC-ATAG 898
||||||||||||||||||||||||||||||||| |||||| || |||||||| | ||||
Sbjct 795 AAATAGGACTAAGTTGCTTGAGCGTCTGTTAGGGAAAACAAAACCTCTATCT-ATTATAG 853
Query 899 AGATTGATCTTAAGAACAAGTTAATCAATGAGTTGTTGGCTTG 941
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 854 AGATTGATCTTAAGAAAAAGTTAATCAATGAGTTGTTGGCTTG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5