BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475666
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65620.1 | Symbols: AS2 | Lateral organ boundaries (LOB) dom... 1495 0.0
> AT1G65620.1 | Symbols: AS2 | Lateral organ boundaries (LOB) domain
family protein | chr1:24398925-24400969 FORWARD LENGTH=1381
Length=1381
Score = 1495 bits (809), Expect = 0.0
Identities = 932/986 (95%), Gaps = 30/986 (3%)
Strand=Plus/Plus
Query 375 GCtttttttATGCAACCCCAAATAGCAGCTTAAAGAAAGCAGAGAGGATCTTCTTTTATT 434
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GCTTTTTGTATGCAACCCCAAATAGCAGCTTAAAGAAAGCAGAGAGGATCTTCTTTTATT 449
Query 435 TCCCCTCTGAGAAACAGAAGCCATTATTCAAAGAAAGGCTTCTTTAATTTACTCACAGGG 494
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 450 TCCCCTCTGAGCAACAGAAGCCATTATTCAAAGAAAGGCTTCTTTAATTTACTCGCAGGG 509
Query 495 AGAGGGaaaaaagaaaaaattgaaaaaCTCCATTTTCAAGTCATTAAAATGGCATCTTCT 554
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AGAGGGAAAAGAGAAAAAATTGAAAAACTCCATTTTCAAGTCATTAAAATGGCATCTTCT 569
Query 555 TCAACAAACTCACCATGCGCCGCTTGCAAATTCCTCCGGCGAAAATGTCAACCGGAATGT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCAACAAACTCACCATGCGCCGCTTGCAAATTCCTCCGGCGAAAATGTCAACCGGAATGT 629
Query 615 GTATTTGCGCCCTATTTCCCACCGGACCAGCCACAAAAATTCGCAAACGTTCACAAAGTG 674
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GTATTCGCGCCCTATTTCCCACCGGACCAGCCACAAAAATTCGCAAACGTTCACAAAGTG 689
Query 675 TTTGGAGCAAGTAACGTGACAAAGCTCCTTAACGAGCTTCATCCTTCACAACGTGAAGAT 734
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 690 TTTGGAGCAAGTAACGTGACAAAGCTCCTCAACGAGCTTCACCCTTCACAACGTGAAGAC 749
Query 735 GCAGTGAACTCTTTGGCCTATGAAGCCGACATGCGTCTCCGTGACCCTGTCTACGGCTGC 794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 750 GCAGTGAACTCTTTGGCCTATGAAGCCGACATGCGCCTCCGTGACCCTGTCTACGGCTGC 809
Query 795 GTCGGCGTTATCTCTCTCCTTCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGT 854
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 810 GTCGGCGTCATCTCTCTCCTCCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGT 869
Query 855 GCTAAATCTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GCTAAATCTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGT 929
Query 915 CTAGGCATCAACTTACTCGCCGGAGCAGCCGATGGAACAGCCACCGCCACCGTGAGAGAC 974
|| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 930 CTTGGCATCAACTTACTCGCCGGAGCAGCAGATGGAACAGCCACCGCC---GTGAGAGAC 986
Query 975 CACCACTATCACCACCATCAGTTTTTTCCTAGAGAACAAATGTTTGGTGGCTTGGATGTT 1034
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CAC---TATCACCACCACCAGTTTTTTCCTAGAGAACAAATGTTTGGTGGCTTGGATGTT 1043
Query 1035 CCGGCCGGTAGCAACTACGACGGTGGGATTCTGGCCATTGGACAGATCACTCAGTTTCAG 1094
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1044 CCGGCCGGTAACAACTACGACGGTGGGATTCTTGCCATTGGACAGATCACTCAGTTTCAG 1103
Query 1095 CAGCCGAGAGCCGCCGCTGGTGATGACGGCCGCCGTACTGTTGATCCGTCTTGAGATTTT 1154
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1104 CAGCCGAGAGCCGCCGCTGGAGATGATGGTCGCCGTACTGTTGATCCGTCTTGAGATTTT 1163
Query 1155 AGGGTTTTGGTGGT-TCC-TCGTT-GTCGAT-GCCTTGGTGATGA-AAAA-TAT--TT-- 1204
|||||||||||||| | | || || |||||| || |||||||||| |||| ||| ||
Sbjct 1164 AGGGTTTTGGTGGTGTTCATC-TTCGTCGATCGC-TTGGTGATGAGAAAACTATAATTTT 1221
Query 1205 --GA---T----G-TG-G-AAAACCAAAATATTTTAAACGTATGGTACGTCTCTCTTGAT 1252
|| | | || | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1222 AAGAAAATATTTGATGTGGAAAACCAAAATATTTTAAACGTATGGTACGTCTCTCTTAAT 1281
Query 1253 GACATTAATTTCAGTTTTTATTATTATTATCACTTAGATATATGATGATAGTCACTTTTG 1312
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1282 GACATTAATTTCGGTTTTTATTATTATTATTACTTAGATATATTATGATAGTCACTTTTG 1341
Query 1313 TATTTCTTTCAAATTTTATGGACTTG 1338
||||||||||||||||||||||||||
Sbjct 1342 TATTTCTTTCAAATTTTATGGACTTG 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5