BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475671
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65650.1 | Symbols: UCH2 | Peptidase C12, ubiquitin carboxyl... 2052 0.0
> AT1G65650.1 | Symbols: UCH2 | Peptidase C12, ubiquitin carboxyl-terminal
hydrolase 1 | chr1:24415015-24417709 REVERSE LENGTH=1289
Length=1289
Score = 2052 bits (1111), Expect = 0.0
Identities = 1205/1250 (96%), Gaps = 8/1250 (1%)
Strand=Plus/Plus
Query 2 TCTGGCTAAGTTAAACCCTAATTCCCAAATTGGAGTCACGAAAGCAATCTCCAAATCTAT 61
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 TCTGGCAAAGTTAAACCCTAATTCCCAAATTGGAGTCACGAAAGCAATCTCCAAATCTAT 76
Query 62 CTCATTCGGTTCGAAGAAGCTTCAAAGGCGATTCCTTTACTTTAGCTAACTAGTAGTTTC 121
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 77 CTCATTCGGTTCGAAGAAGCTTCAAAGGCGATTCCTTTGCTTTAGCTAACTAGTAGTTTC 136
Query 122 ATCATGTCTTGGTGCACGATTGAGTCAGATCCTGGTGTATTTACAGAGCTTATTCAACAA 181
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 137 GTCATGTCTTGGTGCACGATTGAGTCGGATCCTGGTGTATTTACAGAGCTTATTCAACAA 196
Query 182 ATGCAAGTCAAAGGAGTGCAGGTTGAAGAATTGTATTCCCTGGA-TCTTGATTCTCTCAA 240
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 197 ATGCAAGTCAAAGGAGTGCAGGTTGAAGAATTGTATTCCCTGGATTC-TGATTCTCTCAA 255
Query 241 TAACCTCAGACCCGTATATGGTCTGATCTTTCTTTTCAAATGGCAAGTTGGGGAAAAAGA 300
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 256 TAACCTCAGACCCGTATACGGTCTGATCTTTCTTTTCAAATGGCAAGCTGGGGAAAAAGA 315
Query 301 TGATCGTCCAACGATCCAAGATCAAGTTTCAAACTTATTTTTCGCAAATCAGGTCATTAA 360
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 316 TGAGCGTCCAACGATCCAAGATCAAGTTTCGAACTTATTTTTCGCAAATCAGGTCATTAA 375
Query 361 CAATGCTTGTGCAACCCAAGCGATCCTGGCTATCCTCTTGAACTCTCCAGAGGTTGACAT 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 376 CAATGCTTGTGCAACCCAAGCGATCCTTGCTATCCTCTTGAACTCTCCAGAGGTTGACAT 435
Query 421 CGGGCCTGAACTATCGGCGCTGAAAGAATTTACCAAGAACTTTCCATCCGACCTCAAGGG 480
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 436 CGGGCCTGAACTATCAGCGCTGAAAGAATTCACCAAGAACTTTCCATCCGACCTCAAGGG 495
Query 481 TTTGGCTATCAATAACAGTGAGGCAATTCGGGCTGCTCACAACAGTTTCGCAAGGCCTGA 540
||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 496 TTTGGCTATCAATAACAGTGATTCAATCCGGGCTGCGCACAACAGTTTCGCAAGGCCTGA 555
Query 541 GCCATTTGTCCCAGAGGAACAGAAAGCTGCTACAAAAGACGATGACGTATACCATTTCAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GCCATTTGTCCCAGAGGAACAGAAAGCTGCTACAAAAGACGATGACGTATACCATTTCAT 615
Query 601 AAGCTACATACCTGTGGATGGAGTCTTGTACGAGCTTGATGGGCTCAAGGAAGGACCTAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 616 AAGCTACATACCTGTGGATGGAGTCTTGTACGAGCTTGATGGGCTCAAGGAGGGACCTAT 675
Query 661 CAGTCTTGGTCCATGCCCCGGAGACCAAACCGGCATCGAGTGGCTGAAAATGGTTCAACC 720
||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 676 CAGTCTTGGCCCATGCCCCGGAGACCAAACTGGTATCGAGTGGCTGCAAATGGTTCAACC 735
Query 721 AGTGATCCAAGAAAGGATTGAGAGGTACTCACAGAGCGAGATTAGGTTCAATCTTTTGGC 780
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 736 AGTGATCCAAGAACGGATTGAGAGGTACTCACAGAGCGAGATCAGGTTCAATCTTTTGGC 795
Query 781 TGTCATAAAAAACAGGAAGGATATCTACACAGCAGAACTCAAGGAGCTTCAAAGGCAGAG 840
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 796 TGTCATTAAAAACAGGAAGGATATCTACACTGCGGAACTCAAGGAGCTTCAAAGGCAGAG 855
Query 841 GGAACAGCTGTTGCAGCAGGCTAATACTTGTGTGGACAAAAGCGAAGCAGAAGCAGTTAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGAACAGCTGTTGCAGCAGGCTAATACTTGTGTGGACAAAAGCGAAGCAGAAGCAGTTAA 915
Query 901 TGCGTTGATTGAGGAGGTAGGCAGTGGGATCGAGGCTGTGAGTGATAAGATTGTAATGGA 960
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 916 TGCGTTGATTGCTGAGGTAGGCAGTGGGATCGAGGCTGCGAGTGATAAGATTGTAATGGA 975
Query 961 GGAAGAGAAGTTCATGAAATGGAGAACAGAGAACATTAGGAGGAAGCATAACTACATTCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GGAAGAGAAGTTCATGAAATGGAGAACAGAGAACATTAGGAGGAAGCATAACTACATTCC 1035
Query 1021 GTTTTTGTTCAACTTCCTCAAACTTCTTGCAGAGAAGAAACAGTTGAAACCTCTGATTGA 1080
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1036 GTTTCTGTTCAACTTCCTCAAACTTCTTGCTGAGAAGAAACAGTTGAAACCTCTGATTGA 1095
Query 1081 GAAGGCCAAGAAACAGAAAACAGAAAGCTCCACTTGAGAATGTAGACACTTCTCTATGTG 1140
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1096 GAAGGCCAAGAAACAGAAAACAGAAAGTTCCACTTGAGAATGTAGACACTTCTCTATGT- 1154
Query 1141 TT--GGAACTTGTTTTGTCTTCTCCCACCAAATCAATACACTATCTCGTCCTTTTAAGTC 1198
|| |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||
Sbjct 1155 TTCAGGAACTTGTTTTGTCTTCTCTCACCAAATCAATACACTCTCTCTTCCTTT-AAGTC 1213
Query 1199 TTTTGTATTCTAATTTTTGCTACACGACAAATAGATTCTCTAGATTAAGT 1248
|| ||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1214 TT--GTATTCTAATTTTTGTTACACGACTAATAGATTCTCTAGTTTAAGT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5