BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475672
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacti... 2745 0.0
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacti... 2050 0.0
AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting f... 990 0.0
> AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
factor | chr1:24418107-24421292 REVERSE LENGTH=1857
Length=1857
Score = 2745 bits (1486), Expect = 0.0
Identities = 1583/1631 (97%), Gaps = 2/1631 (0%)
Strand=Plus/Plus
Query 1 GTCGAAGCTTCACGATCGTATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 37 GTCGAAGCTTCACGATCGTATAATAATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 96
Query 61 AGATCATAGGAAGCAAATCGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGA 120
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AGACCATAGGAAGCAAATTGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGA 156
Query 121 GGTTGATGAGGATGGAAAGGAAATCAATCCTCATATCCCGCAGTATATGTCATCTGCTCC 180
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 157 GGTTGATGAGGATGGAAAGGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCC 216
Query 181 ATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCC 276
Query 241 TAATTACACTAAGTCATGGTATGACAGAGGTGCAAAGATCTTTCAAGCTGAAAAATACCG 300
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 277 CAATTACACTAAGTCGTGGTATGATAGAGGTGCAAAGATCTTTCAAGCTGAAAAATACCG 336
Query 301 AAAGGGAGCGTGTCAAAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGGATAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CAAGGGAGCGTGTCAAAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGGATAG 396
Query 361 GCCTCGTAAGGTTGGGGCAAAGTACACAAACAAGAACATTGCACCTGATGAGAAAATTGA 420
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 397 GCCTCGTAAGATTGGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGA 456
Query 421 GAGTTTTGAGCTTGACTACGATGGCAAGAGAGACCGATGGAATGGTTATGATCCTTCAAC 480
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 457 AAGTTTTGAACTTGACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGAC 516
Query 481 CTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAGTACTTGAA 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 517 CTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAA 576
Query 541 GGAGCAGCAACTTAAGAAACTGGAGGA-AAAGAACAATAACGAAAAAGGTGATGAGGCAA 599
||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||
Sbjct 577 GGAGCAGCAACTTAAGAAACTTGAGGAGAAA-AACAATAATGAAAAAGGTGATGATGCAA 635
Query 600 CCAGTGATGGGGAGGAAGAAGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGA 659
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 636 ATAGTGATGGGGAAGAAGACGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGA 695
Query 660 GCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTCGAACAACTGGTGGTGGTAGCA 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 696 GCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTAGAACAACTGGTGGTGGTAGCA 755
Query 720 CAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAACCTCG 779
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CAGGAACGGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAACCTCG 815
Query 780 ATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCGCTTCCAG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 816 ATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCACTTCCAG 875
Query 840 ATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAACAGTGGCCAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 876 ATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAATAGTGGCCAAG 935
Query 900 CTTTGGAGTTCAAACAGCTAAACATCCATTCGTGGGAAGCATTTGACAAGGGACAGGACA 959
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 936 CTTTGGAGTTCAAACAGCTAAACATCCATTCATGGGAAGCATTTGACAAGGGACAGGACA 995
Query 960 TGCATATGCAAGCGGCTCCCTCTCAAGCTGAATTGCTCTATAAGAGCTTTCAGGTTGCGA 1019
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 996 TGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAGCTTTCAGGTTGCAA 1055
Query 1020 AGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATGCAGCTA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATGCAGCTA 1115
Query 1080 CAGAAGATGAAATTCCAATGGAGCTTTTGCTTGGGCAAAGCGAAAGACAAGTTGAGTATG 1139
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1116 CAGAAGATGAAATTCCAATGGAGCTTTTACTTGGGCAAAGCGAAAGGCAAGTTGAGTATG 1175
Query 1140 ATCGAGCAGGGAGGATTATAAAGGGACAGGAGGTGATATTGCCAAAGAGTAAATATGAAG 1199
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1176 ACCGAGCAGGGAGGATTATAAAAGGACAGGAGGTGATATTGCCAAAGAGTAAATATGAAG 1235
Query 1200 AAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGCTCATATTGGAAAGATCATCAAT 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1236 AAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGATCATATTGGAAAGATCATCAAT 1295
Query 1260 GGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTCTGCTGGAA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTCTGCTGGAA 1355
Query 1320 TTGAAGCTGCAGAGGCTGCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCAT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TTGAAGCTGCAGAGGCTGCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCAA 1415
Query 1380 CTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCCTCATGGGGAACTGATATTC 1439
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1416 CTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCGTCATGGGGAACTGATATTC 1475
Query 1440 CTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCTAATGCTCTTAAAAAGGAGGATCTCA 1499
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1476 CTGAAGATTTGGAGTTGAACGAGGAGGCACTTGCTAATGCTCTTAAAAAGGAGGATCTCA 1535
Query 1500 GTAGGAAGGAAGAAAAAGATGAGAGGAAACGTAAATACAATGTCAAATACAACAACGATG 1559
|||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1536 GTAGGAGGGAAGAGAAAGATGAGAGGAAACGCAAATACAATGTCAAATACAACAACGATG 1595
Query 1560 TGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGGATCCAATGA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 TGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGGATCCAATGA 1655
Query 1620 GAGATTTCCTC 1630
||||||||||
Sbjct 1656 AAGATTTCCTC 1666
> AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
factor | chr4:17486647-17489294 FORWARD LENGTH=1814
Length=1814
Score = 2050 bits (1110), Expect = 0.0
Identities = 1476/1651 (89%), Gaps = 31/1651 (2%)
Strand=Plus/Plus
Query 2 TCGAAGCTTCACGATCGT-ATAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 60
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 8 TCGAAGCTTAACGATCGTAACAATCATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGA 67
Query 61 AGATCATAGGAAGCAAA-TCGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTG 119
|||||| |||||| ||| | ||||||||||||||||||||||| || || ||||| ||||
Sbjct 68 AGATCACAGGAAG-AAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTG 126
Query 120 AGGTTGATGAGGATGG-AAAGGAAATCAATCCTCATAT-CCCGCAGTATATGTCATCTGC 177
|||| || || ||||| ||| |||||||||||||| || || | ||||||||||| ||
Sbjct 127 AGGTAGACGAAGATGGCAAA-GAAATCAATCCTCACATACCTG-AGTATATGTCAAAAGC 184
Query 178 TCCATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAA-TGGAAGAGTG 236
|||||||||||| || |||||| | ||||||||||||||||||| ||| ||||| | ||
Sbjct 185 TCCATGGTATCTCAAGTCTGAACAGCCGAGTTTGAAGCATCAAA-AAAATTGGAAAATTG 243
Query 237 -ATCCTAATTACACTAAG-TCATGGTATGACAGAGGTGCAAAGATCTTTCAAGCTGAAAA 294
| || || || ||| | ||||||||| |||||| |||||||| |||||||||| |
Sbjct 244 AACCCGAA-CCCAAAAAGAT-ATGGTATGATAGAGGTAAAAAGATCTATCAAGCTGAACA 301
Query 295 ATACCGAAAGGGAGCGTGTCA-AAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTA 353
|||||| |||||||||||| | |||||||||||||||||| || | | ||||||| ||||
Sbjct 302 ATACCGCAAGGGAGCGTGT-ATAAACTGTGGTGCAATGACTCACAGTTCTAAAGCATGTA 360
Query 354 TGGATAGGCCTCGTAAGGTTGGGGC-AAAGTACACAAACAAGAACATTGCACCTGATGAG 412
||||||| ||||||||| |||| || ||| |||||||||| ||||||||| ||||||||
Sbjct 361 TGGATAGACCTCGTAAGATTGGAGCTAAA-TACACAAACATGAACATTGCTGCTGATGAG 419
Query 413 AAAATTGAGAGTTTTGAGCTTGACTACGATGGCAAGAGAGACCGATGGAATGGTTATGAT 472
||||| ||||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||||
Sbjct 420 AAAATCGAGAGTTTTGAACTTGACTATGATGGGAAGAGGGACAGATGGAACGGTTATGAT 479
Query 473 CCTTCAACCTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAG 532
|||||||||||| || |||| |||||| |||||| || |||||||| || |||||||||
Sbjct 480 ACTTCAACCTACCGTCATGTGGTAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAG 539
Query 533 TACT-TGAAGGAGCAGCAACTTAAGAAACTGGAGGAAAAGAACAATAACGAAAAAGGTGA 591
|| | | ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 540 TA-TCTCAAGGAGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGA 598
Query 592 TGAGGCAACCAGTGATGGGGAGGAAGAAGAAGATGACTTAAGGGTTGATGAAGCCAAGGT 651
||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |||||
Sbjct 599 TGATGCAACCAGTGATGGGGAGGAAGACCTTGACGACTTGAGGGTCGATGAAGCTAAGGT 658
Query 652 TGATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGA-AAAGCGTGTTCGAACAACTGGTG 710
||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 659 TGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAA-CGTGTTCGAACAACTGGTG 717
Query 711 GTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGT 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 GTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAATACCTGT 777
Query 771 TGAACCTCGATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACC 830
|||| || ||||| ||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 778 TGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTGAAGATC 837
Query 831 CGCTTCCAGATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAACA 890
| ||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||
Sbjct 838 CACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACA 897
Query 891 GTGGCCAAGCTTTGGAGTTCAAACAGCTAAACATCCATTCGTGGGAAGCATTTGACAAGG 950
||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 898 GTGGCCAAGCTCTGGAGTTCAAACAGATAAACATCCATTCATGTGAAGCATTTGACAAGG 957
Query 951 GACAGGACATGCATATGCAAGCGGCTCCCTCTCAAGCTGAATTGCTCTATAAGAGCTTTC 1010
|||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 958 GACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCTATAAGAACTTTA 1017
Query 1011 AGGTTGCGAAGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGA 1070
| ||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| ||||
Sbjct 1018 AAGTTGCAAAGGAAAAACTGAAAACTCAGACAAAGGACACCATTATGGAAAAGTATGGGA 1077
Query 1071 ATGCAGCTACAGAAGATGAAATTCCAATGGAGCTTTTGCTTGGGCAAAGCGAAAGACAAG 1130
||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1078 ATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAA 1137
Query 1131 TTGAGTATGATC-GAGCAGGGAGGATTATAAAGGGACAGGAGGTGATA-TTGCCAAAGAG 1188
|||||||||| | | |||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 1138 TTGAGTATGA-CAGGGCAGGGAGGATTATGAAGGGACAGGAGGTGATAATT-CCAAAGAG 1195
Query 1189 TAAATATGAAGAAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGCTCATATTGGAA 1248
||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||
Sbjct 1196 CAAATATGAAGAAGATGTTCATGCTAACAATCACACAAGTGTTTGGGGATCATGGTGGAA 1255
Query 1249 AGATCATCAATGGGGATATAAATGTTGCCAGCAGATCA-TTCGCAATAGTTACTGCACAG 1307
|||||| |||||||||||||||||||||||||||| || ||||||| || || |||||||
Sbjct 1256 AGATCACCAATGGGGATATAAATGTTGCCAGCAGA-CAATTCGCAACAGCTATTGCACAG 1314
Query 1308 GTTCTGCTGGAATTGAAGCTGCAGAGGCTGCCC-TTGATCTGATGAAGGCTAATATTGCT 1366
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1315 GTTCTGCTGGAATTGAAGCTGCAGAGGC-GTCCATTGATCTGATGAAGGCTAATATTGCT 1373
Query 1367 CGCAAAGAAGCATCTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCCTCATGG 1426
||||||||||| ||| ||||||| || ||||||||||||||||||| |||||| |||||
Sbjct 1374 CGCAAAGAAGCTTCTAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAAAATGGCGACATGG 1433
Query 1427 GGAACTGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCTCTTGCTAATGCTCTTAAA 1486
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1434 GGAACTGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCACTTGCAAATGCTCTTAAA 1493
Query 1487 AAGGAGGATCTCAGTAGGAAGGAAGAAAAAGATGAGAGGAAACGTAAATACAATGTCAAA 1546
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1494 AAGGAGGATCTAAGTAGGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAAT 1553
Query 1547 TACAACAACGATGTGAC-TCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCA 1605
|||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1554 TACACCAACGATGTGACCTCCG-AGGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCA 1612
Query 1606 TGAGGATCCAATGAGAGATTTCCTCGGCTGA 1636
||||| ||||||||| |||||| |||||||
Sbjct 1613 CGAGGACCCAATGAGAAATTTCCCCGGCTGA 1643
> AT3G45950.1 | Symbols: | Pre-mRNA splicing Prp18-interacting
factor | chr3:16889461-16890618 REVERSE LENGTH=1158
Length=1158
Score = 990 bits (536), Expect = 0.0
Identities = 923/1104 (84%), Gaps = 50/1104 (5%)
Strand=Plus/Plus
Query 26 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAGCAAATCGAATTA 85
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60
Query 86 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAAGGAAATC 145
||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||
Sbjct 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120
Query 146 AATCCTCATATCCCGCAGTATATGTCA-TCTGCTCCATGGTAT-CTTAATTCTGAAAAAC 203
|||| ||| || || ||||| || || | | |||||| ||| | || ||||||||||
Sbjct 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCC-AAGTCTGAAAAAC 178
Query 204 CGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCTAATTACACTA-AGTCATGGTAT 262
|||| ||||||||||||| ||| ||||| | | | || || ||| | | |||| |||
Sbjct 179 CGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACA-TCATATTAT 237
Query 263 GACAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCG-AAAGGGAGCGTGTCAAAACT 320
||| |||||||||||| ||| |||||| ||||| || || ||||| ||||||||||||||
Sbjct 238 GACCGAGGTGCAAAGA-CTTATCAAGCCGAAAAGTATCGGAAAGG-AGCGTGTCAAAACT 295
Query 321 GTGGTGCAATGACGCAT-ACTGCT-AAAGCTTGTATGGATAGGCCTCGTAAGGTTGGGGC 378
||||||||||||||||| | || | ||| | |||||||| || |||||||||||||| ||
Sbjct 296 GTGGTGCAATGACGCATGA-TG-TGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGC 353
Query 379 AAAGTACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTTTTGAGCTTGACTA 438
||| |||||| |||| ||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 354 AAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTA 413
Query 439 CGATGGCAAGAGAGACCGATGGAATGGTTATGATCCTTCAACCTACCATCGTGTGATAGA 498
|||||||| || |||||||||||||||||||||||||| | || || ||||| |||
Sbjct 414 TGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGA 473
Query 499 TCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAGTACTTGAAGGAGCAGCAACTTAAGAA 558
|| | |||||||||||||| |||| ||| |||||||| |||| ||||| ||||| ||
Sbjct 474 TCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT-- 530
Query 559 ACTGGAGGAAAAGAACAATAACGAAAAAGGTGATGAGGCAACCAGTGATGGGGAGGAAGA 618
|| | ||| | || || || || || ||| | |||||| ||||||||
Sbjct 531 --TGC-G-AAA----C--TA--GA----GGAGA--AG--AAC-ATTGATGGAGAGGAAGA 569
Query 619 AGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGAGCAGGCAGATGGATTTTGC 678
||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 570 AGA------CTTAAGGGTTGATGAAGCCAAGATTGATGAGAGCATGCAGGTGGATTTTGC 623
Query 679 AAAGGTTGAAAAGCGTGTTCGAACAACTGGTGGTGGTAGCACAGGAACTGTTAGGAATCT 738
||||||| |||| |||||||||||||||| |||||| |||| ||||||||| |||||| |
Sbjct 624 AAAGGTTAAAAAACGTGTTCGAACAACTGATGGTGGAAGCAAAGGAACTGTAAGGAATTT 683
Query 739 GCGTATCAGAGAAGA-CACTGCAAAATACCTGTTGAACCTCGATGTCAACTCAGCTCATT 797
||||||||||||||| | ||||||||||| |||||||||| ||||| ||||||||| |||
Sbjct 684 GCGTATCAGAGAAGATC-CTGCAAAATACTTGTTGAACCTTGATGTTAACTCAGCTTATT 742
Query 798 ATGACCCTAAAACTCGTTCTATGCGTGAAGACCCGCTTCCAGATGCAGATCCAAATGACA 857
|||| |||||| |||| || ||||||||||| ||||| ||| || ||||||||||||| |
Sbjct 743 ATGATCCTAAATCTCGATCCATGCGTGAAGATCCGCTCCCATATACAGATCCAAATGAGA 802
Query 858 AGTTTTATCTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTTTGGAGTTCAAACAGC 917
| |||| | || ||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 803 AATTTTGTTTGAGAGATAATCAATATAGAAACAGTGGTCAAGCTATAGAGTTCAAACAGC 862
Query 918 TAAACATCCATTCGTGGGAAGCATTTGACAAGGGACAGGACATGCATATGCAAGCGGCTC 977
|||||| |||| || ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 863 AAAACATGTATTCATGTGAAGCGTTTGACAAAGGACAGGACATACATATGCAAGCGGCTC 922
Query 978 CCTCTCAAGCTGAATTGCTCT-ATAAGAGCTTTCAGGTTGCGAAGGAGAAACTGAAATCT 1036
| ||||||||||| ||| | | ||||||| || || |||| ||||| |||||||| |||
Sbjct 923 CATCTCAAGCTGAGTTG-TGTTATAAGAGGGTTAAGATTGCAAAGGAAAAACTGAATTCT 981
Query 1037 CAGACAAAGGACACAATCATGGACAA-GTACGGGAATGCAGCTACAGAAGATGAAATTCC 1095
|||| ||||||| ||||||| | ||| ||| ||| |||||||| || ||||||| |||||
Sbjct 982 CAGAGAAAGGACGCAATCATTG-CAAAGTATGGGGATGCAGCTGCAAAAGATGACATTCC 1040
Query 1096 AATGGAGCTTTTGCTTGGGCAAAG 1119
||||||||||||||||| |||||
Sbjct 1041 GATGGAGCTTTTGCTTGGACAAAG 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5