BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475676
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 961 0.0
> AT1G65720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast
hits to 44 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:24440259-24441073
REVERSE LENGTH=815
Length=815
Score = 961 bits (520), Expect = 0.0
Identities = 590/623 (95%), Gaps = 7/623 (1%)
Strand=Plus/Plus
Query 1 TTGGGTTAGGTTTGTCTTCAAAA---TCAGCAGAAGAAGAAAAAGTCAAAGACGATAACA 57
||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1 TTGGGTTAGGTTTGTCTTCAAAATCGTCAGAAGAAGAAGAAGAAGTCAAAGACGATAACA 60
Query 58 ATGGCGTCATCCTCTTACCTCCGATTTGCGATCGCCGTCATAGCTTTCCTCTCAATCACC 117
||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATGACGTCATCATCGTACCTCCGATTTGCGATCGCCGTCGTAGCTTTCCTCTCAATCACC 120
Query 118 ACCATCTCCGTCGCACGTCCTTGCAAAACCTTCCTCATCTCCTCTTATTCCCTCTCAATA 177
|||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 ACCATCACCACCGCACGTCCTTGCAAAACCTTCCTAATCTCCTCATATTCCCTCTCAATA 180
Query 178 ACCCCAGAAAACCCTAACCTCGAATCCGATTTCACCTCCACTCGATTCGTCACCGTTTTC 237
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACCCCAGAAAACCCTAACCTCGAATCCGATTTCACCTCCACACGATTCGTCACCGTTTTC 240
Query 238 ACAATCCGCCGTCTAAATCCTCACCACATCGTTCCTTTCTTCGTCAATCGTCGTCACGAG 297
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 241 ACAATCCGTCGTCTAAATCCTCACCACGTGGTTCCTTTCTTCGTCAATCGTCGTCACGAG 300
Query 298 AAGCCACAGATCCAATCGGATCGTTCCCTCCCTTTGATCTCTGAGAATATCAATTCGTTT 357
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 301 AAGCCACAGATCCAATCGGATCGTTCCCTCCCTTTGATCTCTGATAACATCAATTCGTTT 360
Query 358 AGAGATCGAACGAGAGATATTCTCAGCGTCGTCGTCGCTCTGTTGTTCGGTGTTGGTTGT 417
||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 361 AGAGATCGAACCAGAGATATTCTTAGCGTCGTCGTCGCGCTTTTGTTCGGTGTTGGTTGT 420
Query 418 GGTGCTTTAACAGCTGCTACTATGTATCTTGTTTGGGCTCTTGTTGTGAATCGTCAAAGC 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTGCTTTAACCGCTGCTACTATGTATCTTGTTTGGGCTCTTGTTGTGAATCGTCAAAGC 480
Query 478 TATGATTTT---GATGAAGAAGATGATTATGAGAATGATGAATCTGATGCTGCTAGCTTG 534
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATGATTTTGAGGAAGAAGAAGATGATTATGAGAATGATGAATCTGATGCTGCTAGCTTG 540
Query 535 AAGAAATTGGGTTATGTTAAGATTCCAGCTCCAGCTCCAGCTCCGGTGAAGGAATCTGCT 594
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 541 AAGAAATTGGGTTATGTTAAGATTCCAGCTCCAGCTCCTGCTCCTGTGAAGGAAGCTGCT 600
Query 595 TGATTTGAGGTTGTGAATTATCA 617
||||||||||||||||||| |||
Sbjct 601 TGATTTGAGGTTGTGAATT-TCA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5