BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475677
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65730.1 | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442... 3258 0.0
> AT1G65730.1 | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442504-24446291
FORWARD LENGTH=2371
Length=2371
Score = 3258 bits (1764), Expect = 0.0
Identities = 2132/2307 (92%), Gaps = 36/2307 (2%)
Strand=Plus/Plus
Query 1 GAATCATTCAGTTATAAGAAAATCGTCctcttctctcgccgatttcttctcttcagattc 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 GAATCATTCAGTTACAAGAAAATCGTCCTCTTCTCTCGCCGATCTCTTCTCTTCAGATCC 60
Query 61 tctcctctataaaatctct--ctctctcG-TCACACAATTCAGATCTGATTC-AATGGAA 116
||||||||||||||||||| |||||||| || | | |||||||||| || ||| ||
Sbjct 61 TCTCCTCTATAAAATCTCTCCCTCTCTCGTTC-CCCTCCTCAGATCTGACTCAAAT-CAA 118
Query 117 GTGGAACAC-C-GATCCAAAAAAGACG-ACGATCTCA-ACA-AC-A--A-C--AACAATG 165
| || || | | | | ||| || |||||| | | | || | | | |||||||
Sbjct 119 ATCAAAAACTCTCAGCTATGGAAGTCGAACGATCGAAGAAAGACGACGATCTAAACAATG 178
Query 166 GATCTAAATCCAACGAAGAAGAAGAAGAAATCTCCGTCGAGAGAATCTTCGAAGCGAGTC 225
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 179 GATCTAAATCCAAC---GAAGAAGAAGAAATCTCCGTGGAGAGAATCTTCGAAGAGAGTA 235
Query 226 ACGAAATCCCACCGCCGTGGCAAAAACAGCTCACGTTTAGAGCTCTAATCGTGAGTTTTA 285
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 236 ACGAAATCCCACCGCCGTGGCAAAAACAGCTCACGTTCAGAGCTCTAATCGTGAGTTTCA 295
Query 286 TACTCGCGATTCTGTTTACGTTTGTGGTGATGAAATTGAATCTAACGACTGGGATTATTC 345
||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 TACTCGCGATTCTCTTTACCTTTGTGGTGATGAAACTGAATCTAACGACTGGGATTATTC 355
Query 346 CGTCGCTTAATATCTCCGCCGGTTTACTTGGTTTCTTCTTCGTTAAAACTTGGACTAAGA 405
||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 356 CGTCGCTGAATATCTCCGCCGGTTTGCTTGGTTTCTTCTTTGTTAAAAGTTGGACTAAGA 415
Query 406 TTCTTAATAAAGCTGGTTTTCTTAAACAACCGTTTACTCGTCAAGAAAACACCGTTATTC 465
||||||||||||||||||||||||||||||||||||| || ||||| || || || ||||
Sbjct 416 TTCTTAATAAAGCTGGTTTTCTTAAACAACCGTTTACACGGCAAGAGAATACTGTGATTC 475
Query 466 AGACTTGTGTCGTCGCTTCCTCCGGCATCGCTTTTAGCGGTGGGTTTGGTAGTTATCTGT 525
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 AGACTTGTGTCGTCGCCTCCTCCGGCATCGCCTTTAGCGGTGGGTTTGGTAGTTATCTGT 535
Query 526 TTGGAATGAGTGATATTGTTGCTAAACAATCTGCGGAAGCTAATACTCCGATGAACATAA 585
|||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 536 TTGGAATGAGTGATGTTGTTGCTAAACAATCTGCGGAAGCCAATACTCCGTTGAACATAA 595
Query 586 AGAATCCTCATTTGGGTTGGATGATTGGATTTCTCTTCGTTGTTAGCTTTCTTGGTCTTT 645
||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 596 AGAATCCACATTTGGGTTGGATGATAGGATTTCTCTTTGTCGTTAGCTTTCTTGGTCTTT 655
Query 646 TCTCTGTCGTTCCTCTTCGAAAGATCATGATTGTGGACTTCAAATTGACATATCCTAGTG 705
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 TCTCCGTCGTTCCTCTTCGAAAGATCATGATCGTGGACTTCAAATTGACATATCCTAGTG 715
Query 706 GTACTGCCACTGCCCATCTCATTAACAGCTTCCACACACCTCAAGGTGCCAAACTCGCAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTACTGCCACTGCCCATCTCATTAACAGCTTCCACACACCTCAAGGTGCCAAACTCGCAA 775
Query 766 AGAAGCAAGTCAGAGCATTGGGGAAGTTCTTTTCATTCAGTTTCTTGTGGGGTTTCTTTC 825
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 776 AGAAGCAAGTCAGAGCATTGGGCAAGTTCTTCTCATTCAGTTTCTTATGGGGTTTCTTTC 835
Query 826 AATGGTTCTTTACTTCTGGTGACGATTGTGGTTTTGCTAACTTCCCTACATTTGGTCTCA 885
||||||||||| || ||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 836 AATGGTTCTTTGCTACTGGTGACGGTTGTGGTTTCGCCAACTTCCCTACATTTGGTCTCA 895
Query 886 AAGCATATGAAAACAAGTTCTACTTTGATTTCTCTGCTACATATGTTGGTGTTGGAATGA 945
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGCCTATGAAAACAAATTCTACTTTGATTTCTCTGCTACATATGTTGGTGTTGGAATGA 955
Query 946 TTTGCCCGTATCTTATCAATGTATCTCTTCTCATTGGATCAATTCTCTCATGGGGTGTTA 1005
|||| || |||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 956 TTTGTCCATATCTTATCAATGTGTCTCTTCTCATCGGAGCAATTCTCTCATGGGGTGTTA 1015
Query 1006 TGTGGCCTCTCATTGGTGCCCAAAAAGGCAAATGGTATTCTGCTGATCT-TAAATCAAGC 1064
|||||||||||||||||||||||||||||||||||||| |||||||||| | | |||| |
Sbjct 1016 TGTGGCCTCTCATTGGTGCCCAAAAAGGCAAATGGTATGCTGCTGATCTCTCA-TCAACC 1074
Query 1065 AGTCTCCATGGTCTTCAAGGCTATAAGGTGTTTATAGCCATAGCTATGATCCTCGGTGAT 1124
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1075 AGTCTCCATGGTCTTCAAGGCTACAGGGTGTTTATAGCCATAGCTATGATCCTCGGTGAT 1134
Query 1125 GGTCTTTACAACTTCATCAAAGTCTTAGGCCGCACTGTCTTCGGTCTATACAAGCAATTC 1184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTCTCTACAACTTCATCAAAGTCTTAGGCCGCACTGTCTTCGGTCTATACAAGCAATTC 1194
Query 1185 AAGAACAAAGATGTTCTTCCTGTCAACGACCGTTCATCACCAGCCACTGTAACCATTTCT 1244
||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||
Sbjct 1195 AAGAACAAAGATGTTCTTCCTATCAACGACCATACATCAACAGCCCCTGTAACCATTTCC 1254
Query 1245 TACGACGACAAAAGAAGAACAGAGCTTTTCCTCAAAGACAGAATCCCATCATGGTTTGCT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TACGACGACAAAAGAAGAACAGAGCTTTTCCTCAAAGACAGAATCCCATCATGGTTTGCT 1314
Query 1305 GTAACTGGTTACGTAGTCAT-GGCTATAGTCTCAATCATCACCGTTCCACACATCTTCCA 1363
||||| ||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1315 GTAACCGGTTACGTAGT-ATTGGCTATAGTCTCAATCATCACAGTTCCACATATCTTCCA 1373
Query 1364 TCAGCTCCAATGGTACCACATTTTGACCATGTACATAATCGCCCCTGTCTTAGCCTTTTG 1423
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1374 TCAGCTAAAATGGTACCACATTTTGATCATGTACATAATCGCCCCTGTCTTAGCCTTTTG 1433
Query 1424 CAATGCCTACGGTTGCGGACTCACTGATTGGTCCTTAGCTTCCACTTATGGAAAACTCGC 1483
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1434 CAACGCCTACGGTTGCGGACTCACTGACTGGTCCTTAGCTTCCACTTATGGAAAACTCGC 1493
Query 1484 TATTTTCACCATCGGAGCCTGGGCTGGTGCAGCCAATGGAGGCGTCTTAGCTGGACTTGC 1543
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 1494 CATTTTCACCATCGGAGCCTGGGCTGGTGCATCTAACGGAGGCGTCTTAGCTGGACTTGC 1553
Query 1544 AGCTTGTGGTGTCATGATGAACATTGTCTCAACAGCTTCTGATCTTATGCAAGATTTCAA 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGCTTGTGGTGTCATGATGAACATTGTCTCAACAGCTTCTGATCTTATGCAAGATTTCAA 1613
Query 1604 AACCGGTTACATGACATTAGCCTCACCGAGATCAATGTTCCTAAGCCAAGCGATTGGAAC 1663
||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||
Sbjct 1614 AACCGGTTACATGACATTAGCCTCACCAAGATCAATGTTCTTGAGCCAAGCCATTGGAAC 1673
Query 1664 TGCCATGGGCTGTGTGATATCTCCTTGCGTCTTCTGGCTATTCTACAAAGCCTTCCCCGA 1723
|||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1674 CGCCATGGGATGTGTGATCTCTCCTTGCGTCTTCTGGCTATTCTACAAGGCGTTCCCTGA 1733
Query 1724 CTTTGGCCAAACCGGGACCGCCTATCCCGCTCCATACGCCTTAGTCTACAGAAACATGTC 1783
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CTTTGGCCAACCCGGGACCGCCTATCCCGCTCCATACGCCTTAGTCTACAGAAACATGTC 1793
Query 1784 TATACTTGGAGTTC-AAGGATTCTCTGCTTTGCCCAAACACTGCCTCATGCTCTGCTATA 1842
|||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1794 TATACTCGGAGT-CGAAGGATTCTCTGCTTTGCCCAAACATTGCCTCATGCTCTGCTACA 1852
Query 1843 TATTCTTCGCAGCAGCAGTGATCGTCAACGGTGTAAGGGATGCCGTGGGGCCAAAGTGGG 1902
||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||
Sbjct 1853 TATTCTTCGCAGCAGCAGTGATCGTAAACGGTATAAGGGATGCCCTTGGGCCAAAGTGGG 1912
Query 1903 CTCGGTTTATCCCCCTCCCGATGGCTATGGCTATACCTTTCTACATTGGAGGTTACTTCA 1962
||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 1913 CTCGGTTTATCCCGCTCCCAATGGCTATGGCTATACCCTTCTACCTTGGAGGTTACTTCA 1972
Query 1963 CAATAGATATGTGTGTGGGAAGTCTCATATTGTTCATCTGGAGGAAGCTGAATAAACCAA 2022
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1973 CAATAGATATGTGTCTGGGAAGTCTCATACTGTTCATCTGGAGGAAGCTGAATAAACCAA 2032
Query 2023 AGGCCGATGCGTACTCTTCGGCCGTTGCTTCAGGTTTGATCTGCGGTGAAGGTATTTGGA 2082
||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct 2033 AGGCCGATGCGTACTCTTCTGCTGTTGCTTCTGGTTTGATCTGTGGTGAAGGTATTTGGA 2092
Query 2083 CTTTACCAAGCTCTATACTTGCCTTGGCTGGTGTTAAGCCTCCTATTTGCATGAAGTTCT 2142
| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2093 CGTTACCAAGCTCTATCCTTGCCTTGGCTGGTGTCAAGGCTCCTATTTGCATGAAGTTCT 2152
Query 2143 TGTCCACTG-CGGCCAACTTGAAGGTTGATTCCCTCTTAAACGCTTCTTAG--TTCTCAt 2199
|||||| || | ||||| ||||||||| || |||||||| ||||||| |||| |
Sbjct 2153 TGTCCA-TGGCTTCCAACAACAAGGTTGATGCCTTCTTAAACCCTTCTTAACATTCTTTT 2211
Query 2200 ttttttt---agagtttggtttttaattttttacgtttgt--gtctagttttaattggct 2254
||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2212 TTTTTTTTTTAGAGTTTGGTTTTTAATTTTCTACGTTTCTTTGTCTAGTTTTAATTGGCT 2271
Query 2255 ttttaggtcctcctctgtcttttCTTT 2281
|||||||||||| | ||||| | ||||
Sbjct 2272 TTTTAGGTCCTCATGTGTCTGT-CTTT 2297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115611855135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5