BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475678
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like r... 2167 0.0
AT3G24540.1 | Symbols: | Protein kinase superfamily protein | ... 861 0.0
AT3G24400.1 | Symbols: | pseudogene, protein kinase family, co... 329 5e-89
> AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like
receptor kinase 1 | chr3:8960258-8963568 FORWARD LENGTH=2377
Length=2377
Score = 2167 bits (1173), Expect = 0.0
Identities = 1522/1685 (90%), Gaps = 45/1685 (3%)
Strand=Plus/Plus
Query 114 ccttcttctcctttacctcctccatctcctcctggatcttccactcctcctcttcctcaa 173
||| ||||| | || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 334 CCTCCTTCT-C-TT-CCTCCTCCATCTCCTCCTGGATCTTTAACTCCTCCTCTTCCTCAA 390
Query 174 ccttctccctccactcccatcactccatctccgccgtctcccaccac-TCCTGGATCAAC 232
||||| |||||| ||||||||||||| ||||| |||||||||||||| ||| | | |
Sbjct 391 CCTTCCCCCTCCGCTCCCATCACTCCTTCTCCACCGTCTCCCACCACACCCTCAAAC-CC 449
Query 233 TAAAAGCCCTCCATCTCC-AAGCTAAGGACCACCAACCAC-CCCTTCAGGACT-TACTCC 289
| ||||||||||||||| || | |||||||||||| ||| ||| |||||| | ||||||
Sbjct 450 TCGAAGCCCTCCATCTCCTAA-CCAAGGACCACCAAACACTCCC-TCAGGA-TCTACTCC 506
Query 290 TCGAACTCCATC-TACA--AACCCATCAGGGGGC-TCTTCTTCTTCTTCTCCCTCG-CCA 344
| |||||||||| ||| || || || | | | ||| |||||| | | | | |
Sbjct 507 TAGAACTCCATCAAACACTAAACCGTC-GCCGCCGTCTGATTCTTCCGATGGATTGTCTA 565
Query 345 CC-GAGTTGTTGTTGGAATCGCCATTGGAGGTGTCGCTGTGCTTGTT-TTCTTGACTTTG 402
|| ||||||| || ||||||||||||||||| |||||| | |||||| | | ||||| ||
Sbjct 566 CCGGAGTTGTGGTAGGAATCGCCATTGGAGGAGTCGCTATTCTTGTTATAC-TGACTCTG 624
Query 403 ATTTGTCTTCTTTGTAAGAAGAAACGAAGAAGAAGACACGATGATGAAGCTGCTTACTAT 462
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 625 ATTTGTCTTCTCTGTAAGAAGAAACGAAGAAGAAGACACGACGATGAAGCTGCTTACTAT 684
Query 463 GTtcctcctcctccacctcc-tcctGGTCCCAAAGCTGGAGGACCTTACGGTGGACAGCA 521
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| || ||
Sbjct 685 GTTCCTCCTCCT---CCTCCAT-CTGGTCCCAAAGCTGGAGGACCTTACGGTGGTCAACA 740
Query 522 ACAGTATTGGCAACAACAGAATGCATCACAACCGTCAGATAATCACGTAATGCCGTCATT 581
|||||||||||||||||| || || |||| |||||||||||||| ||| || |||||||
Sbjct 741 ACAGTATTGGCAACAACAAAACGCGTCACGGCCGTCAGATAATCATGTAGTGACGTCATT 800
Query 582 GCCACCACCACCTAAGCCTCCTTCTCCACCACGACAACCTCCGCCGCCGCCACCACCACC 641
| ||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||
Sbjct 801 G---CCACCACCTAAGCCTCCATCTCCACCACGAAAACCTCCTCCGCCACCTCCACCACC 857
Query 642 GGCATACATGAGCAGCAGTGGAAACTCTGACTATTCGGATCTTCCGGTTCTTCCTCCGCC 701
|||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 858 AGCATTCATGAGTAGCAGTGGTGGTTCTGACTATTCGGATCTTCCGGTTCTTCCTCCACC 917
Query 702 GTCTCCAGGGCTTGTGTTAGGCTTTTCCAAAAGCACTTTCACTTATGAGGAGTTGTCAAG 761
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 918 ATCTCCAGGGCTTGTGTTAGGCTTTTCTAAAAGCACTTTCACTTATGAGGAGTTGTCGAG 977
Query 762 AGCTACTAATGGCTTCTCTGAGGCTAATTTGTTAGGACAAGGCGGGTTTGGTTATGTGCA 821
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 978 AGCTACTAATGGCTTCTCTGAGGCTAATTTGTTAGGACAAGGAGGGTTTGGTTATGTGCA 1037
Query 822 CAAAGGTATATTGCCTAGTGGGAAAGAAGTTGCTGTGAAACAGTTGAAAGCTGGGAGTGG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1038 TAAAGGTATATTGCCTAGTGGGAAAGAAGTTGCTGTGAAACAGTTGAAAGCTGGTAGTGG 1097
Query 882 TCAGGGAGAGAGAGAGTTTCAGGCTGAGGTCGAGATTATTGGCAGAGTTCACCACAGGCA 941
|||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||
Sbjct 1098 TCAGGGAGAGAGAGAGTTTCAGGCTGAGGTTGAGATCATTAGCAGAGTTCATCACAGGCA 1157
Query 942 TTTGGTTTCTCTTATCGGTTATTGTATGGCCGGTGCTCAACGATTGCTTGTCTATGAGTT 1001
||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1158 TTTGGTTTCTCTTATTGGTTATTGTATGGCCGGTGTTCAAAGATTACTTGTCTATGAGTT 1217
Query 1002 TGTTCCCAACAACAATCTCGAGTTTCACCTCCACGGGAAGGGAAGGCCTACAATGGAATG 1061
|||||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||||||
Sbjct 1218 TGTTCCAAACAACAATCTTGAGTTTCACCTCCATGGTAAGGGACGGCCTACGATGGAATG 1277
Query 1062 GAGCACTAGATTGAAGATTGCTCTTGGATCTGCTAAAGGACTTTCATATCTTCATGAAGA 1121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GAGTACTAGATTGAAGATTGCTCTTGGATCTGCTAAAGGACTTTCATATCTTCATGAAGA 1337
Query 1122 TTTATGTGCAATCCGAAAATCATTCACCGTGATATTAAGGCAG-CAAATATACTT-ATGG 1179
|| | ||||||||||||||||||||||||||||||||| | |||| ||| || || |
Sbjct 1338 TT---G--CAATCCGAAAATCATTCACCGTGATATTAAGGC-GTCAAACATA-TTGATTG 1390
Query 1180 ATTTCAAATTTTAAGCTAAGTGTTTTTGTTGCTGACTTTGGTCTTGCCAAGATTGCTTCG 1239
||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1391 ATTTCAAATTTGAAGCTAAG-GTT---G---CTGACTTTGGTCTTGCCAAGATTGCTTCT 1443
Query 1240 GATACAAACACTCATGTATCTACACGCCTGATGGGAACCTTTGGGTATTTGGCTCCAGAA 1299
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1444 GATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTGGGTATTTGGCTCCGGAA 1503
Query 1300 TATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTT 1359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTT 1563
Query 1360 TTGGAGCTTATAACCGGGCGGTGCCCTGTTGATGCAAACAATGTCTATGTAGATGACAGC 1419
||||| ||||| || ||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 1564 TTGGAACTTATTACTGGGAGGCGCCCTGTTGATGCGAACAATGTCTATGTAGATGACAGC 1623
Query 1420 TTAGTTGACTGGGCACGACCTTTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGT 1479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGT 1683
Query 1480 TTGGCTGATTCAAAGATGGGTAACGAGTATGACAAAGAGGAGATGGCTCGTATGGTTGCT 1539
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1684 TTGGCTGATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGATGGCTCGCATGGTTGCT 1743
Query 1540 TGTACTGCAGCTTGTGTTCGCCATTCAGCTCGCCGTAGACCTCGCATGAGCCAGATTGTG 1599
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1744 TGCGCTGCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCATGAGCCAGATAGTA 1803
Query 1600 CGTGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGGGATGAGACCAGGTCAC 1659
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1804 CGGGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGGGATGAGACCGGGTCAC 1863
Query 1660 AGCAACGTTTACAGTTCATATGGAGGAAGCACAGATTACGATACGAGCCAATACAACGAC 1719
|||||||| ||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1864 AGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACACGAGCCAATACAACGAC 1923
Query 1720 GACATGAAAAAGTTTAGGAAAATGGCTCTTGGAACTCAAAGAATACGGCACAACCGGCGA 1779
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1924 GACATGATAAAGTTTAGGAAAATGGCTCTTGGAACTCAA-GAATACGGCACAACCGGCGA 1982
Query 1780 ATACA 1784
||||
Sbjct 1983 GTACA 1987
Score = 161 bits (87), Expect = 2e-38
Identities = 120/135 (89%), Gaps = 5/135 (4%)
Strand=Plus/Plus
Query 1879 GAGAAAATTGCCTTACTCTCTAATTGACTTACTACGATATATGATTTGtttttttttttt 1938
||| ||||||||||||||||||||||| ||||||||||||||||| |||| || ||
Sbjct 2177 GAGGAAATTGCCTTACTCTCTAATTGATTTACTACGATATATGATACGTTTAAAATTGTT 2236
Query 1939 ttGGTTTGGTTTCTTCTTTAGATGTTGTGATGTTGATT----CTGGTTTTGAATATTATT 1994
||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2237 TTGCTTTGGTTTCTTCTTTAGATGTTGTGATGTTGATTGATTCTGGTTT-GAATATTATT 2295
Query 1995 CTTTCATTCtttttt 2009
|||||||||||||||
Sbjct 2296 CTTTCATTCTTTTTT 2310
> AT3G24540.1 | Symbols: | Protein kinase superfamily protein
| chr3:8952903-8955621 FORWARD LENGTH=1530
Length=1530
Score = 861 bits (466), Expect = 0.0
Identities = 796/950 (84%), Gaps = 44/950 (5%)
Strand=Plus/Plus
Query 731 AAAGCACTTTCACTTATGAGGAG-TTGTCAAGAGCTACTAATGGCTTCTCTGAGGCTAAT 789
|||||||||||||||| | |||| | | | ||||| || ||| ||||||||||| |||
Sbjct 491 AAAGCACTTTCACTTACGGGGAGCTAG-CTAGAGCCACCAATAAATTCTCTGAGGCCAAT 549
Query 790 TTGTTAGGACAAGGCGGGTTTGG-TTATGTGCACAAAGGTATATTGCCTAGTGGGAAA-G 847
||||||||| | || || ||||| || || |||||||||||||| || | ||||| |
Sbjct 550 TTGTTAGGAGAGGGTGGATTTGGATT-CGTATACAAAGGTATATTGAATAAT-GGAAATG 607
Query 848 AAGTTGCTGTGAAACAGTTGAAAGCT-GGGAGTGGTCAGGGAGAGAGAGAGTTTCAGGCT 906
||||||| || ||||||||||||| | ||||||| |||||| |||| |||||||||||||
Sbjct 608 AAGTTGCAGTTAAACAGTTGAAAG-TAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCT 666
Query 907 GAGGTCGAGATTATT-GGCAGAGTTCACCACAGGCATTTGGTTTCTCTTATCGGTTATTG 965
||||| | |||||| | || | ||||||| ||| |||||||||| ||| ||||||||||
Sbjct 667 GAGGTTAATATTATTAGCCA-AATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTG 725
Query 966 TATGGCCGGTGCTCAACGATTGCTTGTCTATGAGTTTGTTCCCAACAACAATCTCGAGTT 1025
|| || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 726 CATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTT 785
Query 1026 TCACCTCCACGGGAAGGGAAGGCCTACAATGGAATGGAGCACTA-GATTGAAGATTGCTC 1084
||||||||| ||||| ||| ||||||| ||||||||||| || |||| |||||||||
Sbjct 786 TCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGTT-TAAGATTAAAGATTGCTG 844
Query 1085 TTGGATCTGCTAAAGGACTT-TCATATCTTCATGAAGATTTATGTGCAATCCGAAAATCA 1143
| | ||| | |||||| || || |||||||||||| | || |||||||| |||||||
Sbjct 845 TCAGTTCTTCCAAAGGA-TTGTCTTATCTTCATGAA-A---AT-TGCAATCCTAAAATCA 898
Query 1144 TTCACCGTGATATTAAGGCAGCAAATATACTT-ATGGATTTCAAATTTTAAGCTAAGTGT 1202
| ||||||||||| ||||| ||||| ||| || || |||||||||||| |||| ||| ||
Sbjct 899 TCCACCGTGATATCAAGGCGGCAAACATA-TTGATTGATTTCAAATTTGAAGCAAAG-GT 956
Query 1203 TTTTGTTGCTGACTTTGGTCTTGCCAAGATTGCTTCGGATACAAACACTCATGTATCTAC 1262
| | |||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 957 T---G---CTGATTTTGGTCTCGCCAAGATTGCTTTGGATACAAACACTCATGTATCTAC 1010
Query 1263 ACGCCTGATGGGAACCTTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCAC 1322
||| | |||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1011 ACGTGTTATGGGAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTAC 1070
Query 1323 AGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTTTTGGAGCTTATAACCGGG-CGGT 1381
||||||||||| |||| |||||| |||||||||||||||||||| ||||| ||| || |
Sbjct 1071 TGAAAAGTCTGATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAAC-GGGACG-T 1128
Query 1382 -GCCCTGTTGATGCAAACAATGTCTATGTAGATGACAGCTTAGTTGACTGGGCACGACCT 1440
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1129 CGCCCTGTTGATGCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCA 1188
Query 1441 TTGCTTA-ACCGAGCATCT-GAGGAAGG-AGATTTTGAGGGTTTGGCTGAT-TCAAAGAT 1496
|||||| || |||| || || ||| | | | ||||| |||||||||||| | |||| |
Sbjct 1189 TTGCTTGTACA-AGCA-CTTGAAGAAAGTA-ACTTTGAAGGTTTGGCTGATAT-AAAGCT 1244
Query 1497 GGGTAACGAGTATGACAAAGAGGAGATGGCTCGTATGGTTGCTTGTACTGCAGCTTGTGT 1556
| ||| |||||||| | ||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1245 GAATAATGAGTATGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGT 1304
Query 1557 TCGCCATTCAGCTCGCCGTAGACCTCGCATG-AGCCAGATTGTGCGTGCGTTAGAAGGAA 1615
||| || |||||||||| |||||||||||| | |||| ||||||||| | |||||||||
Sbjct 1305 CCGCTATACAGCTCGCCGAAGACCTCGCATGGA-CCAGGTTGTGCGTGTGCTAGAAGGAA 1363
Query 1616 ATGTATCGCTGTCTGATCTTAA-CGAAGGGATGAGACCAGGTCACAGCAA 1664
| |||||| ||| ||||| || | ||||||| | ||| |||||||||||
Sbjct 1364 ACATATCGCCGTCAGATCTGAATC-AAGGGATAACACCCGGTCACAGCAA 1412
> AT3G24400.1 | Symbols: | pseudogene, protein kinase family,
contains Pfam PF00069: Protein kinase domain; blastp match of
72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus} | chr3:8858484-8861822
REVERSE LENGTH=3339
Length=3339
Score = 329 bits (178), Expect = 5e-89
Identities = 309/372 (83%), Gaps = 10/372 (3%)
Strand=Plus/Plus
Query 671 ACTATTCGGATC-TTCCGGTTCTTCCTCCGCCGTCTCCAGGGCTTGTGTTAGGCTT-TTC 728
|||| ||||||| | | ||||||||||| || || |||||||||| |||||||| |
Sbjct 1246 ACTACTCGGATCAAT-CAGTTCTTCCTCCACCATCACCAGGGCTTGCATTAGGCTTAGGC 1304
Query 729 -CA-A--AA-GCACTTTCACTTATGAGGAGTTGTCAAGAGCTACTAATGGCTTCTCTGAG 783
| | || ||||||||| ||| |||||| | || ||||| || ||||| |||||||||
Sbjct 1305 ATATATCAAGGCACTTTCAATTACGAGGAGCTATCTAGAGCCACCAATGGATTCTCTGAG 1364
Query 784 GCTAATTTGTTAGGACAAGGCGGGTTT-GGTTATGTGCACAAAGGTATATTGCCTAGTGG 842
|| |||||||||||||||||| ||||| || || ||| ||||||||| || | || |||
Sbjct 1365 GCCAATTTGTTAGGACAAGGC-GGTTTCGGATACGTGTTCAAAGGTATGTTACGTAATGG 1423
Query 843 GAAAGAAGTTGCTGTGAAACAGTTGAAAGCTGGGAGTGGTCAGGGAGAGAGAGAGTTTCA 902
||||||||||||||||||||| ||||||| |||||| ||| ||||| |||||||||||
Sbjct 1424 GAAAGAAGTTGCTGTGAAACAATTGAAAGAAGGGAGTTCTCAAGGAGAAAGAGAGTTTCA 1483
Query 903 GGCTGAGGTCGAGATTATTGGCAGAGTTCACCACAGGCATTTGGTTTCTCTTATCGGTTA 962
|| ||||| | ||| ||| || |||| || || || ||||||||| ||||| |||||||
Sbjct 1484 AGCAGAGGTTGGGATCATTAGCCGAGTACATCATAGACATTTGGTTGCTCTTGTCGGTTA 1543
Query 963 TTGTATGGCCGGTGCTCAACGATTGCTTGTCTATGAGTTTGTTCCCAACAACAATCTCGA 1022
||| || |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1544 TTGCATCGCCGATGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGA 1603
Query 1023 GTTTCACCTCCA 1034
||||||||||||
Sbjct 1604 GTTTCACCTCCA 1615
Score = 185 bits (100), Expect = 1e-45
Identities = 137/155 (88%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 1279 TTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTT 1338
||| ||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 2250 TTTAGGTATTTGGCTCCGGAATATGCTTCAAGCGGAAAACTCACGGAAAAGTCTGACGTT 2309
Query 1339 TTCTCATTTGGCGTTGTACTTTTGGAGCTTATAACCGGGCGGT-GCCCTGTTGATGCAAA 1397
||||||||||||||||||||| ||||||| ||||| || || | ||||| |||||| |||
Sbjct 2310 TTCTCATTTGGCGTTGTACTTCTGGAGCTAATAACTGGACG-TCGCCCTATTGATGTAAA 2368
Query 1398 CAATGTCTATGTAGATGACAGCTTAGTTGACTGGG 1432
||||||| ||| |||| ||||||| ||||| ||||
Sbjct 2369 CAATGTCCATGCAGATAACAGCTTGGTTGATTGGG 2403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101957306895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5