BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475684
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66510.1 | Symbols: | AAR2 protein family | chr1:24812837-2... 1775 0.0
AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c... 143 5e-33
AT3G31005.1 | Symbols: | Pseudogene of AT1G66520; PDE194 (PIGM... 126 5e-28
> AT1G66510.1 | Symbols: | AAR2 protein family | chr1:24812837-24816148
FORWARD LENGTH=1407
Length=1407
Score = 1775 bits (961), Expect = 0.0
Identities = 1155/1248 (93%), Gaps = 15/1248 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGAAGGAAGCTATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AGACGAAGAAGAAGGAAGCTATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAG 84
Query 61 CTACGCTTCTCTTTCTCGATGTTCCTCAACATACACTTGTTGGAATCGATACTCAGGTTT 120
|||| ||||| |||||||||||||||||| ||||||| || ||||||||||||||| | |
Sbjct 85 CTACACTTCTATTTCTCGATGTTCCTCAATATACACTGGTCGGAATCGATACTCAGATAT 144
Query 121 TCGCAGTTGGACC-GTCTTTCAAAGGGATTAAGATGATACCTCCCGGAATTCACTTTGTA 179
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 145 TCGCAGTTGGACCAG-CTTTCAAAGGGATTAAGATGATACCTCCTGGAATTCACTTTGTA 203
Query 180 TTCTATAGTTCATCGACCAGGGATGGTAAAGAGTTTTCACCTACCATTGGCTTCTTTGTT 239
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 204 TTCTATAGTTCATCGACAAGGGATGGTAGAGAGTTTTCACCCACCATTGGCTTCTTTGTT 263
Query 240 GATGTTGGTCTTTCTCAGGTTATTGTACGCAAGTGGAATCAGCAAGACGAGTGGTTAGCC 299
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 264 GATGTTGCCCCTTCTCAGGTTATTGTACGCAAATGGAATCAGCAAGACGAGTGGTTAACC 323
Query 300 AAAGTAACTGAAGAAGAGGAAGAGAGATATTCTCAAGCAGTCAGGTCTTTGGAGTTTGAC 359
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 324 AAAGTGTCTGAAGAAGAGGAAGAGAGATATTCTCAAGCAGTCAGGTCTTTAGAGTTTGAC 383
Query 360 AAACATCTTGGCCCATACAATTTAA-GTCAATATGGGGAATGGAAGCACTTATCTAACTA 418
||| ||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||
Sbjct 384 AAAAATCTTGGCCCATACAATTTAAAG-CAATATGGGGAGTGGAGGCACTTATCTAACTA 442
Query 419 TATTACGAAGGATGTTGTTGAAAAGTTTGAGCCAGTTGGAGGAGAAATAACGGTCACCTA 478
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 443 CATTACAAAGGATGTTGTTGAAAAGTTTGAGCCAGTTGGAGGAGAAATAACAGTCACATA 502
Query 479 TGAATCTGCTATTCTAAAAGGTGGACCTAAAACGGCAATGGAAAGAGCACTTGATGCACA 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 503 TGAATCTGCTATTCTAAAAGGTGGACCTAAAACGGCAATGGAAATAGCACTTGATACGCA 562
Query 539 GATGAAGAAAAGCAAGTTTGCGGCATCATCTACTGAGCAACCCAAAGGGAATAGGTTTTA 598
|||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 563 GATGAAAAAAAGCAAGTTTACGACATCATCTACTGAGCAACCTAAAGGGAATAGGTTTTA 622
Query 599 TTACAC-TACTATTCCTCGGATTATAAAGCACAAGGGAATGTCTGGGCAAGAGCTGACCT 657
||||| | ||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 623 CTACACGT-CTATTCCTCGGATTATAAAGCACAAGGGAATGTCTGGACAGGAGCTAACCT 681
Query 658 CTATGAATCTTGACAAGACTCAACTGCTAGAAAGCTTATTGTCAAAGGAGTACAAAGACT 717
||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 682 CTATGAATCTTGACAAGACTCAATTGCTAGAAAGCGTATTGTCAAAAGAGTACAAAGACT 741
Query 718 CGGAAGACTTGCTTCTTGGGGAGCTACAATTTTCCTTTGTAGCATTTTTGATGGGGCAGT 777
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 742 CGGAAGACTTGCTACTTGGGGAGCTACAATTTTCATTTGTTGCATTTTTGATGGGACAGT 801
Query 778 CTCTTGAATCGTTCATGCAGTGGAAGTCCTTAGTTACTCTTCTACTGGGCTGCATT-GAC 836
||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |
Sbjct 802 CTCTTGAATCGTTCATGCAGTGGAAGTCCATAGTTAGTCTTTTACTGGGCTGCACCAGT- 860
Query 837 GCGCCCTTTCATACAAGGAGTCAACTATTTACAAACTTTATGAAAGTCATCTACCATCAA 896
||||||||||| || |||||||| ||||||||||| || || |||||||||||||| |||
Sbjct 861 GCGCCCTTTCAGACGAGGAGTCAGCTATTTACAAAGTTCATCAAAGTCATCTACCACCAA 920
Query 897 CTAAAATATGGGCTACAGAAAGAGAGTAATGGTCCTGAGATGGGCATTCATGCGCTTCTT 956
||||||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 921 CTAAAATATGGACTACAAAAAGAGAATAGTGGTCCTGAGACGGGCATTCATGCGCTTCTT 980
Query 957 GATGATTCTTGGCTAGCTTCCGATAGCTTTCTGCATTTGCTTTGCAAGGACTTTTTTGCT 1016
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 981 GATGATTCTTGGCTAGCTTCAGATAGCTTTCTGCATTTCCTTTGTAAGGACTTCTTTGCA 1040
Query 1017 TTAGTGGAAGAGACTTCTGTAGTTGATGGAGATTTATTGTCTTGGATAAGGAAGTTCAAA 1076
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1041 TTAGTGGAAGAGACGTCTGTAGTTGATGGAGATTTATTGTCATGGACAAGGAAGTTCAAA 1100
Query 1077 GAGTTGCTTGAGAACAGATTGGGATGGGAATTTCAGAAGAAGAGCGCTACTGACGGGATT 1136
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct 1101 GAGTTGCTTGAGAACAGATTAGGATGGGAGTTTCAGAAGAAGAGCGCTGTTGACGGGATT 1160
Query 1137 TACTTTGAGGAAGATGACGAGTATGCTCCTGTGGTTGAGATGTTGGATGAAAGTCATGGA 1196
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TACTTTGAAGAAGATGATGAGTATGCTCCTGTGGTTGAGATGTTGGATGAAAGTCATGGA 1220
Query 1197 GAATATATG--T----CCACTTAGACATCGATCGATGCAG-TCTCTGT 1237
||||||||| | |||||||||||||||||||||||| ||| |||
Sbjct 1221 GAATATATGGATAAAACCACTTAGACATCGATCGATGCAGGTCTTTGT 1268
> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative |
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321
Score = 143 bits (77), Expect = 5e-33
Identities = 96/105 (91%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 1228 CAGTCTCTGTCTTCATAGCTTCTTCAGCTTTTGACCTCTCAAGCCATTCCAAAATGCGGC 1287
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1131 CAGTCTTTGTCTTCATAGCTTCTTCAGCTTTTGACCTCTCAAGCCATTCCAAAAAGCAGC 1072
Query 1288 TGCCTTGATCGCTTTCTTACCAG-AAGGCCGGACTTCTAGTACCT 1331
||| ||||| ||||||||||||| ||| | ||||||| |||||||
Sbjct 1071 TGCGTTGATGGCTTTCTTACCAGGAAG-CTGGACTTCCAGTACCT 1028
> AT3G31005.1 | Symbols: | Pseudogene of AT1G66520; PDE194 (PIGMENT
DEFECTIVE 194); formyltetrahydrofolate deformylase/ hydroxymethyl-,
formyl- and related transferase | chr3:12662598-12670958
REVERSE LENGTH=398
Length=398
Score = 126 bits (68), Expect = 5e-28
Identities = 85/93 (91%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 1240 TCATAGCTTCTTCAGCTTTTGACCTCTCAAGCCATTCCAAAATGCGGCTGCCTTGATCGC 1299
||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 398 TCATATCTTCTTCAGCTTTTGACCTCTCAAGCCATTCCAAAAAGCAGCTGCATTGATGGC 339
Query 1300 TTTCTTACCAG-AAGGCCGGACTTCTAGTACCT 1331
||||||||||| ||| | |||||||||||||||
Sbjct 338 TTTCTTACCAGCAAG-CTGGACTTCTAGTACCT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5