BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475688

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65820.3 | Symbols:  | microsomal glutathione s-transferase,...   521    2e-147


> AT1G65820.3 | Symbols:  | microsomal glutathione s-transferase, 
putative | chr1:24485101-24486892 FORWARD LENGTH=907
Length=907

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 342/371 (92%), Gaps = 4/371 (1%)
 Strand=Plus/Plus

Query  1    ATCAATGGCGGCGATTACTGAATTTCTACCAAACGAGTACGGATATGTCGTTCTCGTTCT  60
            ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct  109  ATCCATGGCGGCGATTACAGAATTTCTACCAAAAGAGTACGGATATGTCGTTCTCGTCCT  168

Query  61   CGTCTTCTACTGTTTCCTCAACCTCTGGATGGGTTTTCAAGTCGGCGGTGCTCGTAAAAG  120
            ||||||||||||||||||||||||||||||||||  |||||||||| | ||||| |||||
Sbjct  169  CGTCTTCTACTGTTTCCTCAACCTCTGGATGGGTGCTCAAGTCGGCAGAGCTCGCAAAAG  228

Query  121  GTACAACGTGCCGTATCCAACTTTATATGCTATAGAATCAGAAAACAAAGATGCTAAGCT  180
            ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  229  GTACAACGTCCCGTATCCAACTCTATATGCAATAGAATCAGAAAACAAAGATGCTAAGCT  288

Query  181  CTTCAACTGTGTTCAGAGAGGACATCAAAACTCTTTAGAGTAT-ATGCCAATGTATTTCA  239
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  289  CTTCAACTGTGTTCAGAGAGGACATCAAAACTCTTTAGAG-ATGATGCCAATGTATTTCA  347

Query  240  TATTGATGATCCTTGGTGGGATGAAGCACCCTTGCATCAGTACTGGCCTTGGCTTGTTTT  299
            || |||||||||| |||||||||||||||||||| ||| ||||||||||||| ||| |||
Sbjct  348  TACTGATGATCCTCGGTGGGATGAAGCACCCTTGTATCTGTACTGGCCTTGGTTTGCTTT  407

Query  300  ACAGCGTTACCCG-TTACTTCTACTTCAAAGGCTACGCTACTGGAGATCCCATGAAGCGT  358
            ||| ||||| ||| || ||||||||| ||||| || ||||||||||||||||||||||||
Sbjct  408  ACAACGTTAGCCGATT-CTTCTACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGT  466

Query  359  CTCACTATCGG  369
            || || |||||
Sbjct  467  CTTACGATCGG  477


 Score =  154 bits (83),  Expect = 9e-37
 Identities = 179/220 (81%), Gaps = 27/220 (12%)
 Strand=Plus/Plus

Query  366  TCGGGAAATACGGTTTCTTGGGACTGATAGGTCTGATGATCTGTACCATCTCGTTTGGCG  425
            ||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||||| |
Sbjct  618  TCGTGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTTGGTG  677

Query  426  TCACTCTTATCCGTGCTTGAGTC-ACTCGTTTCAGGGGGTT--TG-----CT-G---G-T  472
            ||||||| |||| |||||||| | |||||||||  ||||||  ||     || |   | |
Sbjct  678  TCACTCTGATCCTTGCTTGAG-CTACTCGTTTC-TGGGGTTAATGATTCTCTGGTTTGCT  735

Query  473  C---GAATATGGAACCAATCCTTGTAAGCTGTCCACAAAACTTGTGTAAT------G--T  521
            |   |||||| |||||||| ||||||||||||||||||||||||||||||      |  |
Sbjct  736  CGAAGAATATAGAACCAATGCTTGTAAGCTGTCCACAAAACTTGTGTAATACTTTAGAGT  795

Query  522  TTGTCACTTTTTAAAGTT-GTAATGAATCATGGCTTTATA  560
            ||||||||||| |||||| ||||| ||||||||||| |||
Sbjct  796  TTGTCACTTTTAAAAGTTTGTAATAAATCATGGCTTCATA  835



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28332058908


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5