BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475693

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00120.1 | Symbols: ORF143 | hypothetical protein | chrM:320...   278    2e-74


> ATMG00120.1 | Symbols: ORF143 | hypothetical protein | chrM:32041-32472 
REVERSE LENGTH=432
Length=432

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 159/163 (98%), Gaps = 1/163 (1%)
 Strand=Plus/Plus

Query  79   GGCATCGTTCGGAAGAAATTGAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG  138
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  163  GGCATCGTTCGGAATAAATTTAATATCCCCAACCCAAGCCACAGTATTATCGCCTGGATG  222

Query  139  GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCCCTCAACTCTGGGCTTCAGCAGATCGAGTTAGCAGATTTTATCCCAACCAACACCGTG  282

Query  199  ACTCTTTGTGGCATGTGCATGCTTGAAGATGAAAGTGCC-AAC  240
            |||||||||||| |||||||||||||||||||||||||| |||
Sbjct  283  ACTCTTTGTGGCCTGTGCATGCTTGAAGATGAAAGTGCCGAAC  325


 Score =  126 bits (68),  Expect = 8e-29
 Identities = 70/71 (99%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  10  CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTAttttttttCTCCCTGTTGAAGACA  69
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  10  CAGTGTCTAATGCAAGAGATTGCCCTGTATGAACTCTTTTTTTTCTCCCTGTTGAAGACA  69

Query  70  GGATCGTTTGG  80
           |||||||||||
Sbjct  70  GGATCGTTTGG  80



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5