BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475695
Length=3252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65920.1 | Symbols: | Regulator of chromosome condensation ... 4796 0.0
> AT1G65920.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr1:24525102-24529294
REVERSE LENGTH=3276
Length=3276
Score = 4796 bits (2597), Expect = 0.0
Identities = 3019/3223 (94%), Gaps = 28/3223 (1%)
Strand=Plus/Plus
Query 51 tcttcttcttcttcttcttctctGACAAAGTTATGGGCGAACAACAAATCTCAGCTACAG 110
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 59 TCTTCTTCTTCTTCTTCTTCTCTGACAAAGTTATGGGCGAACAACAAATCTCAGTTACAG 118
Query 111 TGCCTCGTGATAGAACTGATGAACAGGCAATCTTGGCTTTGAAGAAAGGTGCTCAGCTTC 170
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 119 TGCCTCGTGATAGAACTGATGAACAGGCAATCTTGGCTTTGAAGAAAGGTGCACAGCTTT 178
Query 171 TGAAATGTCGAAGAAGAGGAAACCCAAAGTTTTGTCCTTTCAAACTCTCAATGGATGAGA 230
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 TGAAATGTCGAAGAAGAGGAAACCCAAAGTTTTGTCCTTTTAAACTCTCAATGGATGAGA 238
Query 231 AGTACTTGATTTGGTACTCAGGAGAAGAAGAGAGACAATTGAGATTGAGTTCGGTTATAA 290
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 239 AGTACTTGATTTGGTACTCAGGAGAAGAGGAGAGACAATTGAGATTGAGTTCTGTTATAA 298
Query 291 CAATCGTTCGAGGACAAATCACGCCAAACTTTCAGAAACAAGCGCAATCGGATCGAAAGG 350
| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 299 CGATTGTTCGCGGACAAATCACACCAAACTTTCAGAAACAAGCACAATCTGATCGAAAGG 358
Query 351 AGCAGTCTTTTTCACTCATTTATGCAAATGGAGAACACACTCTTGATCTTATATGCAAGG 410
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 AACAGTCTTTTTCACTCATTTATGCAAATGGAGAACACACTCTTGATCTCATATGTAAGG 418
Query 411 ATAAAGCACAAGCAGACTCATGGTTTAAAGGTCTTAGAGCTGTGATAACAAAGCACCATA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 ATAAAGCACAAGCAGACTCATGGTTTAAAGGTCTTAGAGCTGTGATAACAAAGCATCATA 478
Query 471 ACATTAGGAACTCTGCGAATCTTCGGACTAGTAGAGGAGCTCAAAGTTGCATCAATAGTC 530
||||||| ||||||| ||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 479 ACATTAGAAACTCTGTGAATCATCGGAGTAGTAGGGGAGCTCAAAGTTGCATCAATAGTC 538
Query 531 CTGCGGGTTTTATGCGCAGGAAACAGAATCTTGGACTTCTTGAAGAGACTCCTGACTTAA 590
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 539 CTGCGGGTTTTATGCGAAGGAAACAGAATCTTGGACTTCTTGAAGAGACTCCTGACGTCA 598
Query 591 CTCAGATACGCAGTTTATGTGGAAGTCCATCTACGTTACTTGAAGAGCGGTGTTTGTCAA 650
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 599 CTCAGATACGTAGCTTATGTGGAAGTCCATCGACGTTACTTGAAGAGCGGTGTTTGTCGA 658
Query 651 ATGGGTTGTCATGTTCTTCAGACAGTTTTGCTGAATCTGATGCCTTGGGTCCAGTTTCTT 710
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 ACGGGTTGTCATGTTCTTCAGATAGTTTTGCTGAATCTGATGCCTTGGGTCCAGTTTCTT 718
Query 711 CTTACTATGAAACAGATTATGATTTCAGGAACTCGGATTGTGAAC---GTACAGGCACAG 767
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 719 CTTACTATGAAACAGATTATGATTTCAGGAACTCGGATTGTGATCGTAGTACAGGTTCAG 778
Query 768 AACTTTGCAGGTTTTCATCACAAAGATTTGCTGCTTCTCCTCCTCCTTCTATCATAACAC 827
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 AACTTTGCAGGTTTTCATCACAAAGATTTGCTGCTTCTCCTCCTCTTTCTATCATAACAC 838
Query 828 AGCCGATTACAAGATCCAATGTCCTCAAGGATATAATGATATGGGGAGCTATAACGGGTC 887
||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 839 AGCCGGTTACAAGATCCAATGTCCTTAAGGACATTATGATATGGGGAGCTATAACGGGTC 898
Query 888 TTATCGATGGATCAAAGAATCAGAACGATGCGTTATCTCCTAAGCTTTTAGAATCTGCCA 947
||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 899 TTATCGATGGATCGAAGAATCAGAACGATGCGTTGTCTCCTAAGCTTTTGGAATCTGCTA 958
Query 948 CAATGTTTGATGTACAGAGTATATCTCTAGGTGCAAAACACGCCGCGCTGGTCACTAGAC 1007
| |||||||||||||||||||||||||||||||||||||| || ||| |||| || ||||
Sbjct 959 CGATGTTTGATGTACAGAGTATATCTCTAGGTGCAAAACATGCTGCGTTGGTTACAAGAC 1018
Query 1008 AAGGTGAAGTGTTTTGTTGGGGAAATGGAAACAGTGGTAAGCTCGGACTTAAAGTTAACA 1067
|||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 1019 AAGGTGAAGTGTTTTGTTGGGGGAATGGAAATAGTGGGAAGCTTGGACTTAAAGTTAACA 1078
Query 1068 TCGACATCGACCATCCGAAACGCGTTGAATCACTTGAGGATGTTGCGGTTCGATCAGTGG 1127
|||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1079 TCGATATCGACCATCCGAAACGCGTTGAGTCTCTTGAGGATGTTGCAGTTCGATCAGTGG 1138
Query 1128 CTTGTAGTGATCATCAAACATGTGCTGTTACGGAATCCGGTGAGCTGTATTTATGGGGAA 1187
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 CTTGTAGTGATCATCAAACGTGTGCTGTTACGGAATCTGGTGAGCTGTATTTATGGGGAA 1198
Query 1188 TCGATGGTGGAACCATTGAGCAATCAGGAAGCCAATTCTTAACTCGGAAGATATCAGATG 1247
| ||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||
Sbjct 1199 TTGATGGTGGAACCATTGAACAGTCAGGAAGCCAGTTCTTGACTCGGAAGATATCCGATG 1258
Query 1248 TTCTTGGCGGATCTCTGAGTATTTTTAGTGTTGCTTGTGGCGCTTGGCATACGGCAATGG 1307
|||||||||||||| ||| | |||| ||||||||||||||||| ||||| |||||||| |
Sbjct 1259 TTCTTGGCGGATCTTTGACTGTTTTAAGTGTTGCTTGTGGCGCGTGGCACACGGCAATTG 1318
Query 1308 TGACTAGTTCTGGTCAACTTTTCACTTATGGTAGCAGAACCTTTGGAGTTCTTGGACATG 1367
|||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1319 TGACTAGTTCTGGTCAGCTTTTCACTTATGGTAGTGGAACTTTTGGAGTTCTTGGACATG 1378
Query 1368 GGAGCCTTGAGAGTGCTACCAAGCCGAAAGAAGTGGAGTCTTTGAGACGAATGAAGGTAA 1427
|||| |||||||||| ||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 1379 GGAGTCTTGAGAGTGTTACAAAGCCGAAAGAAGTTGAGTCTTTGAGACGCATGAAGGTCA 1438
Query 1428 TATCTGTTTCTTGTGGACCGTGGCACACGGCTGCTATAGTGGAAACCGCGATCGACCGGA 1487
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1439 TATCTGTCTCTTGTGGACCGTGGCACACGGCTGCTATAGTGGAAACCGCGAACGACCGGA 1498
Query 1488 AATTCTACAATGCTAAGAGTTGCGGAAAGCTGTTTACTTGGGGAGATGGCGATAAAGGAC 1547
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1499 AATTCTACAACGCCAAGAGTTGTGGAAAGCTGTTTACTTGGGGAGATGGCGATAAAGGAC 1558
Query 1548 GGTTAGGACATGCGGATAGCAAGAGAAAGCTCGTGCCAACGTGTGTTACCGAGCTCATTG 1607
||||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||
Sbjct 1559 GGTTAGGACATGCTGATAGCAAGAGAAAGCTTGTGCCAACTTGTGTTACTGAACTCATTG 1618
Query 1608 ATCATGATTTCATTAAAGTCTCTTGTGGTTGGACTTTAACTGTTGCACTCAGCGTTTCAG 1667
||||||||||||| |||||||||||||| ||||||||||||||||| | ||| ||||||
Sbjct 1619 ATCATGATTTCATAAAAGTCTCTTGTGGATGGACTTTAACTGTTGCTTTAAGCATTTCAG 1678
Query 1668 GAACGGTTTATACAATGGGAAGCTCGATCCACGGGCAGTTGGGATGTCCGCGGGCAAAGG 1727
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1679 GAACGGTTTATACAATGGGAAGCTCGATCCACGGACAGTTAGGATGTCCGCGGGCAAAGG 1738
Query 1728 ATAAGTCGATAAATGTTGTTTTAGGCAATCTAACACGACAATTTGTCAAGGATATTGCTT 1787
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 ATAAGTCGGTAAATGTTGTTTTAGGCAATCTAACACGACAATTTGTCAAGGATATTGCTT 1798
Query 1788 CGGGTTCACATCATGTAGCCGTGCTAACTTCGTTTGGAAATGTTTATACTTGGGGAAAAG 1847
| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1799 CAGGTTCACATCATGTAGCTGTTCTAACTTCATTTGGAAATGTTTATACTTGGGGAAAAG 1858
Query 1848 GCACGAATGGACAACTCGGATTAGGCGATGTTAGAGATAGAAACTCGCCGGTTCTTGTTG 1907
||| |||||||||||| || ||||| || ||||||||||||||||| || ||||||||||
Sbjct 1859 GCATGAATGGACAACTTGGTTTAGGTGACGTTAGAGATAGAAACTCTCCTGTTCTTGTTG 1918
Query 1908 AGCCTTTAGGTGATAGGTTGGTAGAAAGTATAGCTTGCGGGTTGAATTTGACGGCTGCGA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AGCCTTTAGGTGATAGGTTGGTAGAAAGTATAGCTTGCGGGTTGAATTTGACGGCTGCGA 1978
Query 1968 TCTGTTTGCACAAAGAAATCTCTTTGACTGATCAAACCGCTTGTAGTTCTTGCAAATCAG 2027
||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1979 TCTGTTTACACAAAGAGATCTCTTTGAATGATCAAACCGCTTGTAGTTCTTGCAAATCAG 2038
Query 2028 CTTTTGGATTCACAAGGAAAAAGCACAACTGTTACAACTGTGGTCTATTGTTCTGCAATG 2087
|||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 2039 CTTTTGGATTCACAAGGAGAAAGCATAACTGTTACAACTGTGGTCTATTGTTTTGCAATG 2098
Query 2088 CATGTAGTAGCAAGAAAGCGGTAAATGCTTCGTTGGCGCCAAACAAAAGCAAGCTTTCTC 2147
|||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct 2099 CATGTAGTAGCAAGAAAGCGGTAAATGCTTCGTTAGCACCGAATAAAAGCAAGCTTTCTC 2158
Query 2148 GGGTTTGCGATTCTTGCTTTGATCATCTATGGAGTATAACAGAGTTTTCAAGAAATGTTA 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 GGGTTTGCGATTCTTGCTTTGATCATCTATGGAGTATAACAGAGTTTTCAAGAAATGTTA 2218
Query 2208 AGACGGAGAATCACACTCCGAGGATGCAGCTGGTTACACGAAGGGTATCTGAGGATTGGA 2267
||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 2219 AGATGGATAATCACACTCCGAGGATGCAGATGGTTACACGAAGAGTATCTGAGGATTTGA 2278
Query 2268 CAGAAAAAGAAGCAGAGAATCAGATGCAGAATGTTCCACAAGCTAATCGATTTTCGGATG 2327
|||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 2279 CAGAAAAACAATCAGAGAATGAGATGCAGAATCTTCCACAAGCTAATCGATCTTCGGATG 2338
Query 2328 GACAGCCTCGATGGGGACAAGTCTCTGTTCCTTCTCTGTTTCATTTCGATAAAATTTCGA 2387
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 2339 GACAGCCTCGATGGGGACAAGTCTCTGGTCCTTCTCTGTTTCGTTTCGATAAGATTTCGA 2398
Query 2388 CAAGTTCTCCTATT-AATCTATCAGTCTCAGCGAGGCGACCATCTTCTACGAAGATTTCA 2446
|||||||| || || ||||| ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 2399 CAAGTTCTTCT-TTGAATCTTTCAGTCTCAGCAAGGCGAACATCTTCAACGAAGATTTCA 2457
Query 2447 ACCTCGTCTGAGTCGAATAAGATCTTAATCGAAGAAATTGAAAGACTAAAAGCCGAGATA 2506
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||
Sbjct 2458 ACCTCGTCTGAGTCGAATAAGATCTTAACCGAAGAAATCGAAAGGCTAAAAGCCGTGATA 2517
Query 2507 AGAAATCTCCAGAAGCAGTGTGAACTTGGGAACGAGAAGATGGAAGAATGCCAACAAGAG 2566
| ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2518 AAAAATCTCCAGAGGCAGTGTGAACTTGGCAATGAGAAGATGGAAGAATGTCAACAAGAG 2577
Query 2567 CTCGACAAGACATGGGAAGTTGCTAAAGAAGAAGCCGAGAAGTCGAAAGCTGCTAAAGAG 2626
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2578 CTCGACAAGACATGGGAAGTTGCTAAAGAAGAAGCAGAGAAATCGAAAGCTGCTAAAGAG 2637
Query 2627 ATAATAAAAGCCTTGGCATCAAAGCTTCAAACGAATAAAGAGAAACCGAGTAATCCTCCG 2686
|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2638 ATAATAAAAGCCTTGGCATCGAAGCTCCAAGCGAATAAAGAGAAACCGAGTAATCCTCTG 2697
Query 2687 AAGACCGGCATTGCGTGCAATCCTTCTCAAGTCTCACCAATCTTTGATGATTCAATGTCC 2746
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2698 AAGACCGGCATTGCATGCAATCCTTCTCAAGTCTCACCAATCTTTGATGACTCAATGTCC 2757
Query 2747 ATTCCATATCTCACACCAATCACCACAGCTCGTTCCCACCCCGAAAACAAACAACTA-GT 2805
|||||||| |||||||||||||||||||||||||| || | ||||| |||||||| | ||
Sbjct 2758 ATTCCATACCTCACACCAATCACCACAGCTCGTTCACAACACGAAACCAAACAAC-ATGT 2816
Query 2806 AGAGAAATGTGTCACGAAATCCTCGAACCGTGACAGCAACATTAAGCTATTAGTAGATGC 2865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2817 AGAGAAATGTGTCACGAAATCCTCGAACCGTGACAGCAACATTAAGCTATTAGTAGATGC 2876
Query 2866 ATCGCCTGCCATCACAAGAACAGGGTATCTCCAAAACGAAACACAAGACTCAACAGCAGA 2925
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2877 ATCGCCAGCCATCACAAGAACAGGGTATCTCCAAAACGAAACACAAGACTCGTCAGCAGA 2936
Query 2926 ACAAGTTGAGCAATACGAGCCCGGTGTATATATAACTTTCACGGCCTTGCCTTGCGGTCA 2985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2937 ACAAGTTGAGCAATACGAGCCCGGTGTATATATAACTTTCACGGCCTTGCCTTGCGGTCA 2996
Query 2986 GAAGACGCTTAAACGCGTACGGTTTAGTCGAAAGAGGTTTTCAGAGAAGGAAGCACAAAT 3045
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2997 GAAGACGCTTAAACGCGTACGGTTTAGTCGGAAGAGGTTTTCAGAGAAGGAAGCACAAAG 3056
Query 3046 ATGGTGGGAAGAGAAACAGGTTTTGGTCTATAACAAGTATGATGCTGAAGCATGAAACTA 3105
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3057 ATGGTGGGAAGAGAAGCAGGTTTTGGTCTATAACAAGTATGATGCTGAAATATGAAACTA 3116
Query 3106 ACTTT-GA----A-T-----G--T--ATTTTAATTCATTTTGATGCTTGTTAGTGATTAT 3150
||||| || | | | | ||||||||||||||||||| |||||||||| |||
Sbjct 3117 ACTTTTGAGTTTACTTCTTCGAATGTATTTTAATTCATTTTGATGTTTGTTAGTGAATAT 3176
Query 3151 ATCTAATGCAgaaaaatttctttatttaagaaaatatggaaaaaatatactgg-aaataa 3209
|| ||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||| ||
Sbjct 3177 ATGTAATGCAGAAAAATTTCTTTATTTAAGAAAAAATGAAAAAAAAATACTGGGAAA-AA 3235
Query 3210 aattccaataaatatgatattaataaaaatatTTTGATGATCA 3252
|||||||||| |||||| | |||||||||||||| |||||||
Sbjct 3236 AATTCCAATA--TATGAT-T-AATAAAAATATTTTAATGATCA 3274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161788391175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5