BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475697
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65950.1 | Symbols: | Protein kinase superfamily protein | ... 2843 0.0
> AT1G65950.1 | Symbols: | Protein kinase superfamily protein
| chr1:24546704-24551144 REVERSE LENGTH=1837
Length=1837
Score = 2843 bits (1539), Expect = 0.0
Identities = 1743/1840 (95%), Gaps = 19/1840 (1%)
Strand=Plus/Plus
Query 1 AACCCAAAAAATCAACAAAAATGGAGATTCTCCGCAAATTCAAATTTAC-CGGGAGATCC 59
|||||||| |||| |||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 6 AACCCAAAGAATCCACAAAAATGGAGATTCTCCGCAAATTCAAAATT-CTCGGGAGATCC 64
Query 60 AAGTCTCCGATCTTTGCTTTCACAGTCA---CCGGCCTAGCTCTAACTGCCGTCACTGGC 116
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 65 AAGTCTCCGATCTTTGCTTTCACAGTCACCGCCGGCCTAGCTCTAACCGCCGTCACTGGC 124
Query 117 GGCGCCACCGCCGTGTCTATCTTCCGAGACTCACCTTCCAATAAATTCGCGACGGCGGTA 176
|||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||
Sbjct 125 AGCGCCACCGCCGTGTCCATCTTCCGAGACTCACCTTCCAATAAAATAGCGACGGCTGTA 184
Query 177 GAAGGCGTAGTCCGTTCTTCTCGCGCTATCTACTCCATCACTCTCACTGTCGCCGATTAC 236
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 185 GAAGGCGTCGTCCGTTCTTCTCGCGCTATCTACTCCATCACTCTCACTGTCGCTGATTAC 244
Query 237 AAGTATAGC-TTGCGTAGATTACCAGCAGATTCCGATGAGTATCTTCAGAGATTAACAGA 295
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AAGTATA-CTTTGCGTAGATTACCAGCAGATTCCGATGAGTATCTTCAGAGATTAACAGA 303
Query 296 GGTTCATTCACGGTCTGCTAAACGAATTCTTAAACTATGTGAAAGTAATAAAGGTTTTTA 355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 304 GGTTCATTCACGGTCTGCTAAACGAATTCTTAAACTGTGTGAAAGTAATAAAGGTTTCTA 363
Query 356 TGTGAAAGCTGGTCAGTTTGTGGCTACGTTGAAGCTGGTTCCGAAAGAGTACTCTTTGGC 415
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 364 TGTGAAAGCTGGTCAGTTTGTGGCTACGTTGAAGCTCGTTCCGAAAGAGTACTCGTTGGC 423
Query 416 TCTTTCGTCGTTGCAGGATAAGGCTGTTCCTTGTAATTTTCAAGAAATAAAGCACGTTCT 475
|||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 424 TCTTTCCTCGTTGCAGGACAAGGCAGTTCCTTGTAACTTTCAAGAAATAAAGCAAGTTCT 483
Query 476 GACAAGTAATTTGGGTCAAAATCTCACAGAGATGTATTTATCTTTTGATGAGGAACCAAT 535
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 484 GACAAGTAACTTGGGTCAAAATCTCACAGAGATATATTTATCTTTTGATGAGGAACCAAT 543
Query 536 TGCGGCAGCATCTATTGCTCAAGTTCATCATGCTGTATTGAAGAATCACCAGGAAGTAGC 595
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 544 TGCGGCAGCATCTATTGCTCAAGTACATCATGCTGTATTGAAGAACCACCAGGAAGTAGC 603
Query 596 AGTAAAGGTGCAATACCCTGGATTGAAGCAGAACATGAAGTTAGATACAACGATCATGTC 655
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 604 AGTAAAGGTGCAATACCCTGGATTGAAGCAGAACATGATGTTAGATACAATGATAATGTC 663
Query 656 GTTCCTTTCAAAATCAGTGGCAAAGATATTTCCAGAATACAGATTTGATTGGCTAGTTTA 715
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 664 ATTCCTTTCAAAATCAGTCGCAAAGATATTTCCAGAATACAGATTTGATTGGCTAGTTTA 723
Query 716 TGAATTCGTAAAGTCAATTTCCCAGGAACTTGATTTTATACAGGAGGCAAAAAATTCAGA 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 724 TGAATTCGTAAAGTCAATTTCCCAGGAACTTGATTTTCTACAGGAGGCAAAAAATTCAGA 783
Query 776 GAGAATTGCCAAAAACTTCAAACATAACAAAATGATTACAATTCCTACGGTGTTTTGGGA 835
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 784 GAGAATTGCCAAAAACTTCAAACATAACAAAATGATTACAATTCCTACAGTGTTTTCGGA 843
Query 836 GTTCACAACTACTCAAGTCCTGACAATGCAGTTTTGCAAGGGTTTCAAGGTTGATGATGT 895
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 844 GTTCACAACCACTCAAGTGCTGACAATGCAGTTTTGCAAGGGTTTCAAGGTTGACGATGT 903
Query 896 GGAATCCCTCAAAAGCTCTAATGTAAGTCCACAAAAGGTTGCTAAAGTATTGGTTGAAGT 955
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 904 GGAATCCCTCAAAAGGACTAATGTAAGTCCAGAAAAGGTTGCTAAAGTATTGGTTGAAGT 963
Query 956 GTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATAT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATAT 1023
Query 1016 ACTAGTTTCTCCTGGAGGCCAGAATGGTTTCTCTCTAGTTCTGCTAGACCACGGGAACTG 1075
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1024 ACTAGTTTCTCCTGAAGGCCAGAATGGCTTCTCTCTAGTTCTGCTAGACCATGGGAACTG 1083
Query 1076 TAAAACATTGGATGAAGGATTTAGGCGGGACTTTTGTCGGCTGTGGGAGGCTTTGATTCT 1135
||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1084 TAAAACATTGGATGAAGCATTTAGGCGGGACTTTTGTCGGTTGTGGGAAGCTTTGATTCT 1143
Query 1136 TCTTGACTCGAACAAGATACAAGAATTAGGGAAACAGTTTGGAGTTGGAAAATATGCCAA 1195
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1144 TCTAGACTCGAACAAGATACAAGAATTAGGGAAACAGTTTGGGGTTGGAAAATATGCCAA 1203
Query 1196 ATTCTTCCCCGTCATTTTTACCGGAAGAACTAGTGACAGCAAATCAGGACTGGGAAAAGG 1255
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1204 ATTCTTCCCCGTCATTTTCACCGGAAGAACTAGTGAAAGCAAATCAGGACTGGGAAAAGG 1263
Query 1256 AATGTCTATACAAGAGAGGCAAAAACTGAAACAAGAGCTCAAGCTTCTGAGATTGGAAGA 1315
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1264 AATGTCTATACAAGAGAGGCAAAAACTGAAACAGGAGCTCAAACTTCTGAGATTGGAAGA 1323
Query 1316 CGTAACAACTTTCATGGGGTCTCTTCCACCTGACTTTCTAACTGTACTGCGAACAGATGG 1375
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1324 CGTAACAACTTTCATGGGGTCTCTTCCACCTGACTTTCTAACCGTTCTGCGAACAGATGG 1383
Query 1376 ACTCATACGTTCAATCACTCTGAAGTTAGGTGCTCCACAACGGGTGAGACTACTCGCTTA 1435
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACTCATACGGTCAATCACTCTAAAGTTAGGTGCTCCACAACGGGTGAGACTACTCGCTTA 1443
Query 1436 TGCGAAATATGCTGTATACGGGCTTGGCTACAAACCAACTTCTGAACCAGATTTTGTTGA 1495
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TGCGAAATATGCGGTATACGGGCTTGGCTACAAACCAACTTCTGAACCAGATTTTGTTGA 1503
Query 1496 GAAGTCGATAATCTCCAGATCTGTAATGTTAATGAGTTACCTTCGGTTACGTTTTATTCT 1555
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1504 GAAGTCGGTAATCTCCAGATCTGTAATGTTAATGAGTTACCTTCGGTTACGTCTTATTCT 1563
Query 1556 GGAATTGATGGAACTATTTCAAGGAATGAAGAAGCTAAAACATACCATCTACGGTTTCTA 1615
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1564 AGAATTGATGGAACTCTTTCAAGGAATGAAGAAGCTAAAACATACCATATACGGTTTCTA 1623
Query 1616 TGGGCAACTCGTTGGCGGTATCACAAATAGTGTAAAGCGAATTACATGCAGCGTATGAAA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TGGGCAACTCGTTGGCGGTATCACAAATAGTGTAAAGCGAATTACATGCAGCGTATGAAA 1683
Query 1676 TTATTATTATGATGTAGAAATTGGTTTAAAAGTGTCTCTGAAATATTTATTTATTTGGA- 1734
||| |||||||||||| |||||||| |||||||||| ||| |||||| ||| | | ||
Sbjct 1684 ATATGATTATGATGTAGGAATTGGTTCAAAAGTGTCTTTGATATATTT-TTTGTATCGAA 1742
Query 1735 -CGGATATAA-GTGA-ATC-G-ACTCTTTGGCAGCTGAAACCAATGACTTTCTCGGTACA 1789
|||| |||| | || || | | |||| || |||||||||||||| ||||||||||
Sbjct 1743 ACGGA-ATAACG-GATATATGTAAA-TTTG--AGGTGAAACCAATGACTCTCTCGGTACA 1797
Query 1790 ACAAACTTTAATCAAAGAAAAACCAAGACCCGACCTGACC 1829
|| |||||||||||||||||||| |||| ||||| |||||
Sbjct 1798 ACGAACTTTAATCAAAGAAAAACAAAGAACCGACTTGACC 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5