BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475700
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62300.2 | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 ... 3109 0.0
> AT3G62300.2 | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724
7 | chr3:23054004-23057180 FORWARD LENGTH=2514
Length=2514
Score = 3109 bits (1683), Expect = 0.0
Identities = 2125/2336 (91%), Gaps = 46/2336 (2%)
Strand=Plus/Plus
Query 3 AGCTCACTTTATCTTTCGTCTCTCTTCTTCTTAGGTCTAGGGTTCTGGT------GA-T- 54
|||||||||||||||||| |||| |||||||||||||||||||||||| || |
Sbjct 155 AGCTCACTTTATCTTTCG--TCTC-TCTTCTTAGGTCTAGGGTTCTGGTGGAGAAGATTG 211
Query 55 T-GTTG---CTTTGGGTTTTCTGAGAGAAACCATGTTGTTAACTACGGGAAGAAAGGAGA 110
| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 212 TGGTTGTTTCTTAGGGTTTTCTGAGAGAAAGCATGTTGTTAACTACGGGAAGAAAGGAGA 271
Query 111 AGCTCTCCGTTTCTAAAGGTTCTGAAATTGAAGTCTCTTCTCAAGAGTATGAGTATGGTA 170
| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 272 AACTCTCTGTTTCTAAAGGTTCTGAAATTGAAATCTCGTCTCAAGAGTATGAGTATGGTA 331
Query 171 CTGGCAATGTCTGGTACTGCGCCATTCTCGAAGAAACTCTAGCTAAATCGAAGCGGAAGA 230
||| ||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 332 GTGGAAATGTCTGGTATTGTGTCATTCTCGAAGAAAATCTAGCTAAATCGAAGCGGAAGA 391
Query 231 AGCTCTCCGTTCGTCACTTGGATCCTCTGCTCAAGGATGATTATTCTCCTCCGTTAATCC 290
||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 392 AGCTCTCTGTCCGTCACTTGGATCCTCTGCTCAAGTATGATTATTCTCCTCCGTTAATCA 451
Query 291 AAACCACCGTGCATCGTTTGATGCGTCCAGTTCCGCCGCCGGATCCGTTTCCAGAGGTCG 350
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 452 AAACCACCGTGCATCGTTTCATGCGTCCAGTTCCGCCGCCGGATCCATTTCCAGAGGTCG 511
Query 351 ATTTTGAGGAAGGTGACGTCATTGACGCTGCTCATAAAGGTGGTTGGTGGTCTGGCTTGG 410
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||
Sbjct 512 ATTTTGAGGAAGGTGACGTGGTTGACGCTGCTTATAAAGGTGGTTGGTGTTCTGGCTCGG 571
Query 411 TGATTAAAGTGCTGGGAAATTGGCGTTTCTTGGTGTATCTCAGATTCCAACCTGATGTCA 470
|| ||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 572 TGGTTAAAGTTTTGGGAAATCGGCGTTTCTTAGTGTATCTTAGATTCCAACCTGATGTCA 631
Query 471 TCGAGCTTCAACGAAAGGATCTGCGTCCGCATTTCACTTGGAAAGATGACGAATGGTTTC 530
| ||||||| |||||||||||||||||| |||||| |||||||||||| || |||||||
Sbjct 632 TTGAGCTTCTACGAAAGGATCTGCGTCCCCATTTCGTTTGGAAAGATGAAGAGTGGTTTC 691
Query 531 GATACGAGAAACTACAATTGACTGAGTCGGATTTTAGTGCCGGAAAGTCTGTAGAAGTCA 590
||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||
Sbjct 692 GATGCGAGAAACAACAATTGATTGAGTCAGATTTTAGTGCTGGAAAGTCTGTTGAAGTCA 751
Query 591 GAACCGAGGTAGACAATTTGGGTGATGTTTGGGCTCCGGCTATGGCCATTAAGGAGAATG 650
||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 752 GAACCAAGGTAGACAAATTGGGCGATGTTTGGGCTCCGGCTATGGTCATTAAGGAGGATG 811
Query 651 AAGATGGGACATTATTGGTGAAGTTGAAGACTTT-AAGCGATGAAGAGGTCGATTGCACC 709
| ||||||||| | |||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 812 AGGATGGGACAATGTTGGTGAAGTTGAAGACTTTGAAG-GAGGAAGAGGTTAATTGCACA 870
Query 710 AAGATAAGCGTTTCTTATTCCAAAATCCGACCTTCACCACTGCCTATTGGTTTAAGAGAT 769
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 871 AAGATAAGCGTTTCTTATTCCGAAATCCGACCTTCGCCATTGCCTATTGGTTTAAGAGAT 930
Query 770 TACAAATTGATGGAAAATGTGGATGCGCTTGTTGAGTCTGGATGGTGTCCGGGTGTTGTT 829
||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||||||
Sbjct 931 TACAAATTGATGGAAAACGTGGATGCGCTAGTAGAGTCTGGTTGGTGTCCTGGTGTTGTT 990
Query 830 AGTAAAGTTCTTTTC-GGGAAGAGATACGCAGTGGCTTTGGGGCCAAACAAGGAGAGTAA 888
|||||||||| || | ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 991 AGTAAAGTTC-TTGCTGGGAAGAGATACGCAGTGGATTTGGGGCCAAACAGGGAGAGTAA 1049
Query 889 GGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAGTTTGGCATA- 947
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1050 GGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAATTTGGCATAG 1109
Query 948 AAGAAGAAAAAGTTT-ATGATATCGAAGAGAGTTCTCATGGAGTTGAAGAAACAGCTCG- 1005
|| ||||||| |||| | | || ||| || ||||| |||| |||||||||||||||| |
Sbjct 1110 AA-AAGAAAAGGTTTCA-GGTAGCGAGGAAAGTTCGCATGCAGTTGAAGAAACAGCT-GC 1166
Query 1006 TTCAACCCGCATAAGGGTAACTGTTCGAACTGCCCTGAGAGAGAGGCATGCTTCGGCCT- 1064
|||||||||||||||| | ||||||||||||||| ||| ||||| | |||| || |
Sbjct 1167 TTCAACCCGCATAAGGATCACTGTTCGAACTGCCTTGAAAGAGAAAAAAGCTTTGG-GTA 1225
Query 1065 CAGTAAAAAATTTGAGGGCGACACGCTCTTCTAGTGGTGCTATCCAGAATATGCAGAATC 1124
| | || ||| ||||| ||||||||||||||||| | | || |||||| || |
Sbjct 1226 CTGGAATCAATGTGAGGACGACACGCTCTTCTAGT-G-G------AG-CTATGCATAACC 1276
Query 1125 CTCTTCCTGCCTC-TTCCA--GTGGAGATGTTGCAGAGGCTGGTAGAGCATCTGTCACTG 1181
||||||||||||| ||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 1277 CTCTTCCTGCCTCTTTCAATGGAGGAGATGTTGCAGAGGCTGGTAGAGTATCTGTCACTG 1336
Query 1182 TGAGTGAAACACCGCTCTCCGTAACTGCAGCT---TTATCTGGAGAATTAGGGAGTAGGA 1238
||| |||||||||||||| || |||||||||| |||||||||||| |||||| |||
Sbjct 1337 TGAATGAAACACCGCTCTTCGAAACTGCAGCTCAGTTATCTGGAGAACTAGGGAATAGTT 1396
Query 1239 TGACTGATGTTGTGATGAATGAGAACACTCCAGTCACAAGCCAACCGGAGATAGCAGCAC 1298
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1397 TGGCTGATGTTGTGATGAATGAGAGCGCTCCAGTCACAAGCCAACCGGAGATAGCAGCAC 1456
Query 1299 CAAAAGATTTTCACCCATCGATAGTCCTGGGCGTAGCCGCAGCGGTCAAAACACAAGGAA 1358
||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 1457 CAAAAGAGTTTCACCCATCGGTAGTCCTGGGCGTAGCTGCAGCAGTCAAAACACAAGGAA 1516
Query 1359 AAACATCTCCAAAGAAGAAACTTCAGGCAATGAAGAATCAAAAGAGCTCTACAAATGATT 1418
||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1517 AAACAACTCCGAAGAAGAAACTTCAAGCGATGAAGAATCAAAAGAGCTCTACAAATGATT 1576
Query 1419 CTGCTAAAGAGAAGGTGAGTGTTAATAAGAGGAAAAGAGGACAGCCACGCAAGTTCATAA 1478
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1577 CTGTTGGAGAGAAGGTGAGTGTTAACAAGAGGAAAAGAGGACAGCCACGCAAGTTCAT-A 1635
Query 1479 G-CACAGAGCCTAAGCAGAAGACTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACTATT 1537
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1636 GTCGCAGAGCCTAAGCAGAAGATTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACTATT 1695
Query 1538 GAACATACCGATATGACTGAGGATGATAGGCCTCTTGCTTCATGGATCCACGCTGGAAAT 1597
|||||| ||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||
Sbjct 1696 GAACATGCCGATATGACTGATGATGATAGGCCTCTCGCTTCATGGGTCCACACTGGAAAT 1755
Query 1598 TCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATCTAGGGCTTAATACAGTTGTGGAA 1657
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1756 TCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATATAGGGCTTAATACAGTTGTGGAA 1815
Query 1658 AAGCATGTCGATGTTTTGGAAACTCCCCCAGCGAGAGAGTCGACAATGGTTCTACCATTT 1717
|||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1816 AAGCATGTCGATATTGTGGAAACTCCCCCAGGGAGAGAGTCGACAATGGTTCTGCCATTT 1875
Query 1718 GTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAA-ACAGTGCC 1776
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1876 GTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAAGTC-GTGCC 1934
Query 1777 ACAGCGTCCACATTTCAGTCCACTGCTAGATAGCGAAGAAGAGTTCCGTGAAGGAGATGC 1836
|||| ||||||||||||| || |||||||| ||||||||||||| |||||||||||| ||
Sbjct 1935 ACAGAGTCCACATTTCAGCCCTCTGCTAGAGAGCGAAGAAGAGTGCCGTGAAGGAGACGC 1994
Query 1837 TATTGGTACAATGGTGAAGTTTAGTTCGCTGTTAGAGAAAGTCAACAACCTACAAGTCGA 1896
||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1995 CATTGGTAGAATGGTGATGTTTAGTTCGCTGTTAGAGAAAGTCAACAATCTACAAGTCGA 2054
Query 1897 CGATCCAATAAGCTCGATTAATAGGATTGACGAGTGTTTCCTCAAGCTNNNGAAACACGG 1956
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 2055 CGATCCAATAAGCTCGATTAACAGGATCGACGAGTGTTTCCTCAAGCTTGAGAAACACGG 2114
Query 1957 GTTCAATGTTACAACACCTCGATCTCGGATCGCCAAGCTATTGTCCATTAAAGAAAGGCA 2016
||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||
Sbjct 2115 GTTCAATGTTACAACACCTCGATCTAGGATAGCCAAGATACTGTCCATTAAAGAAAGGCA 2174
Query 2017 GACATGCGCATTGGAAGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAATAA 2076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 GACATGCGCATTGGAGGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAATAA 2234
Query 2077 AAGAAGGAAGTATGAAGAAGATATTGCTGAATTGCAGAGACAAGAAGTGTTGATGAAGGA 2136
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2235 AAGAAGGAAGTATGAAGAAGATATTGTTGAATTGCAGAGGCAAGAAGTGTTGATGAAGGA 2294
Query 2137 AGCAAAAGTAACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCTTGA 2196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 AGCAAAAGTCACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCTTGA 2354
Query 2197 CCAAAAGGTTCAGAATGTAGATCAGGAGTTTCAGGCAATTGTCGCTACCCAATGGAAATA 2256
|||| ||||||||||||||||||| || |||||||||||| ||||| ||| |||||||||
Sbjct 2355 CCAAGAGGTTCAGAATGTAGATCACGAATTTCAGGCAATTCTCGCTGCCCCATGGAAATA 2414
Query 2257 AGCAAGTCGTAGATCAGACGTTTATGTTTAAGAATAATTGAGTTCTCTGTAAGTTG 2312
|||||||||| ||||| || ||| |||||||||||||||||| |||||||| ||||
Sbjct 2415 AGCAAGTCGTTGATCAAACCTTTGTGTTTAAGAATAATTGAGATCTCTGTACGTTG 2470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114758445870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5