BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475702
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62280.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1801 0.0
> AT3G62280.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:23049423-23051152 REVERSE LENGTH=1195
Length=1195
Score = 1801 bits (975), Expect = 0.0
Identities = 1118/1186 (94%), Gaps = 14/1186 (1%)
Strand=Plus/Plus
Query 1 GATTAAAATTTTATGAGTAGCAAAATAATTCAAAAGAAATGGATTCCGCTGTTTCCTCTC 60
|||||||||| | |||||||| || ||||||||||||||||||| | ||||||||||||
Sbjct 1 GATTAAAATTATCTGAGTAGC--AAGAATTCAAAAGAAATGGATTACACTGTTTCCTCTC 58
Query 61 TACAATTCTTCTTCTTTA-TTTTATGTCTATCTCTTATGGTTTGCTCTAACTCTGAAATT 119
|||||| ||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |
Sbjct 59 TACAATGCTTCTTC-TTAGTTTTATGTCTCTCTCTTTTGGTTTGCTCTAACTCTGAAACT 117
Query 120 AGTTCCAAGTCAAACAAGAAACGTATACTGATAAACTTCGGCGACTCTAACTCCGACACT 179
|||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 118 AGTTACAAGTCAAACAAGAAACCTATATTGATAAACTTCGGCGACTCTAACTCCGACACC 177
Query 180 GGAGGAGTTCTTGCTGGAGTAGGACTTCCTATCGGACTTCCTCATGGCATTACCTTCTTC 239
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GGAGGAGTTCTTGCTGGAGTTGGACTTCCTATCGGACTCCCTCATGGCATTACCTTCTTC 237
Query 240 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTTCTGTGAACAT 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTACTGTGAACAT 297
Query 300 TTAAAGATGACATATCTGAGTCCATATTTGGATTCA-TTGTCACCAAATTTCAAAAGAGG 358
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 298 TTAAAGATGACATATTTGAGTCCATATTTGGATTCACTT-TCACCAAATTTCAAAAGAGG 356
Query 359 AGTCAATTTCGCAGTCTCGGGAGCCACCGCTCTTCCAG-TGTTTTCCTTCCCTCTTGCCA 417
||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 357 AGTCAATTTCGCAGTCTCGGGCGCCACCGCTCTTCC-GATCTTTTCCTTCCCTCTTGCCA 415
Query 418 TTCAAATCCGCCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGGA 477
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 416 TTCAAATTCGTCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGTA 475
Query 478 GAAGAGATCTTATTGATGATAATGGATTTAAAAACGCATTGTACATGATCGATATTGGAC 537
||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 476 GAAGAGACCTTATTGATGATAATGGATTTAGAAACGCGTTGTACATGATCGATATTGGAC 535
Query 538 AAAATGATCTTTTACTTGCTCTATACGATTCAAATTTAACCTATACACCCGTTGTCGAAA 597
|||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 536 AAAACGATCTTTTACTTGCTCTATATGATTCGAATTTAACCTATGCACCCGTTGTCGAAA 595
Query 598 AAATTCCTTCCATGCTTCTCGAGATAAAGAAAGCCATACAGACCGTATATTTATACGGAG 657
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 AAATTCCTTCCATGCTTCTTGAGATAAAGAAAGCCATACAGACTGTATATTTATACGGAG 655
Query 658 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 715
Query 718 TTCATCC-GCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAACGAA 776
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 716 TTCA-CCTGCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAATGAA 774
Query 777 GTCG-CAGAAGCTTTCAACAAAGGACTCTTTAGTCTCTGCAACGAACTGAGATCGCAGTT 835
|||| || |||| ||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 775 GTCGCCA-AAGCCTTCAACAAAGGACTCCTTAGTCTCTGCAACGAACTGAGATCCCAATT 833
Query 836 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATACAAACTCTCCGCCGA 895
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATATAAACTCTCCGCCGA 893
Query 896 TTTCAAACGATACGGATTTGTGGATCCGTTAATGGCTTGTTGTGGTTATGGAGGAAGGCC 955
|||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 894 TTTCAAACTATACGGATTTGTGGACCCGTTGATGGCTTGTTGCGGTTATGGAGGAAGACC 953
Query 956 TAACAACTACGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1015
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TAACAACTATGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1013
Query 1016 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACCGAAGCTGCTAACCGGGTTGTCGT 1075
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1014 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACTGAAGCTGCTAACCGGTTTGTCGT 1073
Query 1076 TGATGCGGTTTTGACAAATCGGTACTCTTACCCAAAGA-TTCCCCTTGACCGGTTTTGGT 1134
|||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1074 TGATGCTGTTTTGACGAATCGGTACTCTTACCCAAAAAATTCCC-TTGACCGGTTTTGGT 1132
Query 1135 AGTTCTAGTACAAGTCAATCTATTTAACCGGTTTTGTTAATAAAGT 1180
|| ||||| |||| ||||||||||| || ||||| |||||||||||
Sbjct 1133 AGATCTAGAACAAATCAATCTATTTGACTGGTTTGGTTAATAAAGT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5