BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475704
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65970.1 | Symbols: TPX2 | thioredoxin-dependent peroxidase ... 1129 0.0
AT1G60740.1 | Symbols: | Thioredoxin superfamily protein | chr... 1002 0.0
AT1G65980.1 | Symbols: TPX1 | thioredoxin-dependent peroxidase ... 739 0.0
AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:... 536 1e-151
> AT1G65970.1 | Symbols: TPX2 | thioredoxin-dependent peroxidase
2 | chr1:24557372-24558322 REVERSE LENGTH=737
Length=737
Score = 1129 bits (611), Expect = 0.0
Identities = 693/733 (95%), Gaps = 4/733 (1%)
Strand=Plus/Plus
Query 1 ATAAATTGTCCTAAGACCTAAATTCATTTTCCCTCTCAAGTCAAACAAAACTCTTCTATT 60
||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATAAATTGTCCTAAGGCCTAAATACATTTTCGCACTCAAGTCAAACAAAACTCTTCTATT 60
Query 61 TTCCCCTGTCTTCATCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGAT 120
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTCTGTC-T--TCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGAT 117
Query 121 GTTGTACCAAACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAAACTGTCTCC 180
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 118 GTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAGACCGTCTCC 177
Query 181 GTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACT 237
Query 241 CCCACTTGCAGTATGAGCCATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCA 300
||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 238 CCCACATGCAGTATGAGCCATGTGCCTGGATTCATTGGGAAAGCAGAGGAGCTGAAGTCA 297
Query 301 AAGGGTGTTGATGACATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGG 360
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGGGTATTGATGAGATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGG 357
Query 361 GGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTAGCAGATGGTTCTGGAGAATAC 420
||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 358 GGAAAAACATATCCAGAGAACAAGCATGTGAAGTTTGTAGCAGATGGGTCTGGAGAATAC 417
Query 421 ACACACCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGG 480
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGCATCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGG 477
Query 481 AGATTCGCTTTGTTGCTCGATAACCTTAAGGTGACTGTAGCTAATGTCGAATCTGGTGGC 540
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 478 AGATTCGCTTTGTTGCTTGATAACCTTAAGGTGACTGTAGCCAATGTTGAATCTGGTGGC 537
Query 541 GAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCTAAGAAACTTTATT-TTT 599
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||
Sbjct 538 GAGTTCACGGTTTCCAGCGCAGAGGATATTCTCAAGGCTCTTTAAGAAACTTTATCGTTT 597
Query 600 CGCTTGTTGTGTTGTGAATCTAAACCGCTGTATGTGAAGAAGAGAATTCTATAGCCTAAT 659
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| | ||
Sbjct 598 CGCTTGTTGTATTGTGAATCTAAACTGCTGTATGTGAAGAAGAGATTTCTATAGCTTGAT 657
Query 660 TTCAATCAACAAGCAAGTGTTTGACTTGCTTGGCATAATAAAGTATTTGATAATCGTTCA 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 TTCAATCAACAAGCATGTGTTTGACTTGCTTGGCATAATAAAGTATTTGATAAACGTTCA 717
Query 720 ATAACAACGGCTT 732
||||||| |||||
Sbjct 718 ATAACAATGGCTT 730
> AT1G60740.1 | Symbols: | Thioredoxin superfamily protein | chr1:22361074-22361952
FORWARD LENGTH=677
Length=677
Score = 1002 bits (542), Expect = 0.0
Identities = 625/665 (94%), Gaps = 5/665 (1%)
Strand=Plus/Plus
Query 46 CAAAACTCTTCTATTTTCCCCTGTCTTCATCAAAACC-ACAGAGATCTCTTCATGGCTCC 104
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 5 CAAAACTCTTCTATTTTCCCCTGTCTTCAT---ATCCAACAGAGATCTCTTCATGGCTCC 61
Query 105 AATTACTGTCGGCGATGTTGTACCAAACGGAACTATCTCTTTCTTCGATGAAAATGATCA 164
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 AATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCA 121
Query 165 GCTTCAAACTGTCTCCGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 224
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 GCTTCAGACCGTCTCTGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 181
Query 225 TCCTGGTGCTTTCACTCCCACTTGCAGTATGAGCCATGTTCCTGGGTTCATTGAGAAAGC 284
||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||
Sbjct 182 TCCTGGTGCTTTCACTCCCACATGCAGCATGAGCCATGTGCCTGGATTCATTGGGAAAGC 241
Query 285 AGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAATGATCCATT 344
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 242 AGAGGAGCTGAAGTCAAAGGGTATCGATGAGATCATTTGCTTTAGTGTGAATGATCCATT 301
Query 345 TGTGATGAAGGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTAGCAGA 404
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 302 TGTGATGAAGGCATGGGGAAAGACATACCAAGAGAACAAGCATGTGAAGTTTGTAGCAGA 361
Query 405 TGGTTCTGGAGAATACACACACCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCT 464
||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 362 TGGGTCTGGAGAATACACACATCTTCTTGGACTTGAGCTTGATCTCAAGGACAAGGGTCT 421
Query 465 TGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTCGATAACCTTAAGGTGACTGTAGCTAA 524
||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||| ||
Sbjct 422 TGGTATTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTTAAGGTAACTGTAGCCAA 481
Query 525 TGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCTA 584
||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 482 TGTCGAAAATGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATCCTTAAGGCTCTCTA 541
Query 585 AGAAACTTTATTTTTCGCTTGTTGTGTTGTGAATCTAAACCGCTGTATGTGAAGAAGAGA 644
|||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 AGAAACATTATCATTCGCTTGTTGTATTGTGAATCTAAACCGCTGTATGTGAAGAAGAGA 601
Query 645 ATTCTATAGCCTAATTTCAATCAACAAGCAAGTGT-TTGACTTGCTTGGCATAATAAAGT 703
||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 602 ATTATATAGCCTGATTTCAATCAACAAGCAAGTGTATTGACTTGCTTGGCATAATAAAGT 661
Query 704 ATTTG 708
|||||
Sbjct 662 ATTTG 666
> AT1G65980.1 | Symbols: TPX1 | thioredoxin-dependent peroxidase
1 | chr1:24559306-24560936 REVERSE LENGTH=890
Length=890
Score = 739 bits (400), Expect = 0.0
Identities = 525/585 (90%), Gaps = 10/585 (2%)
Strand=Plus/Plus
Query 71 TTCATCAAAACCACAGAGATCTCTTCATGGCTCCAATTACTGTCGGCGATGTTGTACCAA 130
||| |||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 158 TTCGTCAACTCCACAGAGATCTCCTCATGGCTCCAATTGCTGTCGGCGATGTCGTACCAG 217
Query 131 ACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAAACTGTCTCCGTTCACTCTA 190
||||||||||||| ||||||||||| |||||||| ||||| || | |||||||||||||
Sbjct 218 ACGGAACTATCTCCTTCTTCGATGAGAATGATCAACTTCAGACCGCCTCCGTTCACTCTC 277
Query 191 TCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACTTGCA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACTTGCA 337
Query 251 GTATGA-GCCATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTT 309
| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GCATGAAGC-ATGTTCCTGGGTTCATTGAGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTT 396
Query 310 GATGACATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGGGGAAAGACA 369
||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 397 GATGAGATCATTTGCTTTAGCGTGAACGATCCGTTTGTGATGAAAGCATGGGGAAAAACA 456
Query 370 TACCCAGAGAACGAGCATGTGAAGTTTGTAGCAGATGGTTCTGGAGAATACACACACCTT 429
|||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 457 TACCCAGAGAACAAACATGTGAAGTTTGTAGCTGATGGGTCTGGAGAATACACACACCTT 516
Query 430 CTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCT 489
|| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 517 CTCGGACTTGAGCTTGACCTTAAAGACAAGGGTCTTGGTGTTAGGTCAAGGAGATTTGCT 576
Query 490 TTGTTGCTCGATAACCTTAAGGTGACTGTAGCTAATGTCGAATCTGGTGGCGAGTTCACG 549
|||| || ||| | || || ||||||||||| |||||||||||||||||||| |||||
Sbjct 577 CTGTTACTTGATGATCTCAAAGTGACTGTAGCCAATGTCGAATCTGGTGGCGAATTCACA 636
Query 550 GTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCTAAGAAACTTTATTTTTCGCTTGTTGT 609
||||| |||||||| ||||||||||||||||||||||||| | || | ||||| ||
Sbjct 637 GTTTCCAGCGCCGATGATATCCTCAAGGCTCTCTAAGAAA-TGTAC----CACTTGT-GT 690
Query 610 GTTGTGAATCTAAACCGCTGTATGTGAAGAAGAGAATTCTATAGC 654
| || || |||||||||||||||| || |||| ||||||||||
Sbjct 691 -T-GTCTATGTAAACCGCTGTATGTGTAGTAGAGGATTCTATAGC 733
> AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:24552003-24557730
FORWARD LENGTH=2053
Length=2053
Score = 536 bits (290), Expect = 1e-151
Identities = 331/351 (94%), Gaps = 1/351 (0%)
Strand=Plus/Minus
Query 383 AGCATGTGAAGTTTGTAGCAGATGGTTCTGGAGAATACACACACCTTCTTGGACTTGAGC 442
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2052 AGCATGTGAAGTTTGTAGCAGATGGGTCTGGAGAATACACGCATCTTCTTGGACTTGAGC 1993
Query 443 TTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTCGATA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1992 TTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTTGATA 1933
Query 503 ACCTTAAGGTGACTGTAGCTAATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCG 562
||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1932 ACCTTAAGGTGACTGTAGCCAATGTTGAATCTGGTGGCGAGTTCACGGTTTCCAGCGCAG 1873
Query 563 AGGATATCCTCAAGGCTCTCTAAGAAACTTTATT-TTTCGCTTGTTGTGTTGTGAATCTA 621
||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||
Sbjct 1872 AGGATATTCTCAAGGCTCTTTAAGAAACTTTATCGTTTCGCTTGTTGTATTGTGAATCTA 1813
Query 622 AACCGCTGTATGTGAAGAAGAGAATTCTATAGCCTAATTTCAATCAACAAGCAAGTGTTT 681
||| ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct 1812 AACTGCTGTATGTGAAGAAGAGATTTCTATAGCTTGATTTCAATCAACAAGCATGTGTTT 1753
Query 682 GACTTGCTTGGCATAATAAAGTATTTGATAATCGTTCAATAACAACGGCTT 732
||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1752 GACTTGCTTGGCATAATAAAGTATTTGATAAACGTTCAATAACAATGGCTT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5