BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475706
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65980.1 | Symbols: TPX1 | thioredoxin-dependent peroxidase ... 896 0.0
AT1G60740.1 | Symbols: | Thioredoxin superfamily protein | chr... 802 0.0
AT1G65970.1 | Symbols: TPX2 | thioredoxin-dependent peroxidase ... 773 0.0
> AT1G65980.1 | Symbols: TPX1 | thioredoxin-dependent peroxidase
1 | chr1:24559306-24560936 REVERSE LENGTH=890
Length=890
Score = 896 bits (485), Expect = 0.0
Identities = 571/611 (93%), Gaps = 11/611 (2%)
Strand=Plus/Plus
Query 25 TAAGTCCAAACACTTTCACTTT-TCCCCTTTCTTCAAATCCACAGAGATCTCTCCTCATG 83
|||||||||||||||||| ||| || |||||| |||| |||||||||| ||||||||||
Sbjct 130 TAAGTCCAAACACTTTCA-TTTGTCTCCTTTCGTCAACTCCACAGAGA--TCTCCTCATG 186
Query 84 GCTCCAATCACCGTCGGCGATGTTGTACCAGACGGAACAATCTCCTTCTTCGATGAGAAT 143
|||||||| | ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 187 GCTCCAATTGCTGTCGGCGATGTCGTACCAGACGGAACTATCTCCTTCTTCGATGAGAAT 246
Query 144 GATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTT 306
Query 204 GGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGCATGTTCCTGGGTTCATTGAG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGCATGTTCCTGGGTTCATTGAG 366
Query 264 AAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAACGAT 323
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 367 AAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGAGATCATTTGCTTTAGCGTGAACGAT 426
Query 324 CCGTTTGTGATGAAAGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTA 383
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 427 CCGTTTGTGATGAAAGCATGGGGAAAAACATACCCAGAGAACAAACATGTGAAGTTTGTA 486
Query 384 GCAGATGGTTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTCAAGGATAAG 443
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 487 GCTGATGGGTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTTAAAGACAAG 546
Query 444 GGTCTTGGTGTTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTCAAGGTGACTGTA 503
||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||
Sbjct 547 GGTCTTGGTGTTAGGTCAAGGAGATTTGCTCTGTTACTTGATGATCTCAAAGTGACTGTA 606
Query 504 GCCAATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCT 563
||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct 607 GCCAATGTCGAATCTGGTGGCGAATTCACAGTTTCCAGCGCCGATGATATCCTCAAGGCT 666
Query 564 CTCTAAGAAACGTACCACGCGTTTGTTGTCTTGTGTATGTAAACCGCTGTATGTGAAGTA 623
|||||||||| ||||||| || || || | || |||||||||||||||||||| ||||
Sbjct 667 CTCTAAGAAATGTACCAC---TT-GT-GT-T-GTCTATGTAAACCGCTGTATGTGTAGTA 719
Query 624 GAGGATTCTAT 634
|||||||||||
Sbjct 720 GAGGATTCTAT 730
> AT1G60740.1 | Symbols: | Thioredoxin superfamily protein | chr1:22361074-22361952
FORWARD LENGTH=677
Length=677
Score = 802 bits (434), Expect = 0.0
Identities = 556/614 (91%), Gaps = 11/614 (2%)
Strand=Plus/Plus
Query 26 AAGTCCAAACACT-TTC-ACTTTTCCCCTTTCTTCAAATCC-ACAGAGATCTCTCCTCAT 82
|||| |||| ||| ||| | ||||||||| |||||| |||| |||||||||||| ||||
Sbjct 1 AAGT-CAAA-ACTCTTCTA-TTTTCCCCTGTCTTCATATCCAACAGAGATCTCT--TCAT 55
Query 83 GGCTCCAATCACCGTCGGCGATGTTGTACCAGACGGAACAATCTCCTTCTTCGATGAGAA 142
||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 56 GGCTCCAATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAA 115
Query 143 TGATCAACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTT 202
|||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 116 TGATCAGCTTCAGACCGTCTCTGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTT 175
Query 203 TGGTGTTCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGC-ATGTTCCTGGGTTCATTG 261
||||||||||||||||||||||||||| |||||||||| || |||| ||||| |||||||
Sbjct 176 TGGTGTTCCTGGTGCTTTCACTCCCACATGCAGCATGA-GCCATGTGCCTGGATTCATTG 234
Query 262 AGAAAGCAGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAACG 321
|||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |
Sbjct 235 GGAAAGCAGAGGAGCTGAAGTCAAAGGGTATCGATGAGATCATTTGCTTTAGTGTGAATG 294
Query 322 ATCCGTTTGTGATGAAAGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTG 381
|||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 295 ATCCATTTGTGATGAAGGCATGGGGAAAGACATACCAAGAGAACAAGCATGTGAAGTTTG 354
Query 382 TAGCAGATGGTTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTCAAGGATA 441
|||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| |
Sbjct 355 TAGCAGATGGGTCTGGAGAATACACACATCTTCTTGGACTTGAGCTTGATCTCAAGGACA 414
Query 442 AGGGTCTTGGTGTTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTCAAGGTGACTG 501
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 415 AGGGTCTTGGTATTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTTAAGGTAACTG 474
Query 502 TAGCCAATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGG 561
|||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 475 TAGCCAATGTCGAAAATGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATCCTTAAGG 534
Query 562 CTCTCTAAGAAACGT-ACCACGCGTTTGTTGTCTTGTGTATGTAAACCGCTGTATGTGAA 620
||||||||||||| | | || || ||||||| ||||| || ||||||||||||||||||
Sbjct 535 CTCTCTAAGAAACATTATCATTCGCTTGTTGTATTGTGAATCTAAACCGCTGTATGTGAA 594
Query 621 GTAGAGGATTCTAT 634
| |||| ||| |||
Sbjct 595 GAAGAGAATTATAT 608
> AT1G65970.1 | Symbols: TPX2 | thioredoxin-dependent peroxidase
2 | chr1:24557372-24558322 REVERSE LENGTH=737
Length=737
Score = 773 bits (418), Expect = 0.0
Identities = 548/610 (90%), Gaps = 12/610 (2%)
Strand=Plus/Plus
Query 31 CAAACACT-TTC-ACTTTTCCCCTTTCTTCAAATCCACAGAGATCTCTCCTCATGGCTCC 88
|||| ||| ||| | |||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 46 CAAA-ACTCTTCTA-TTTTCCTCTGTCTTCAAAACCACAGAGATCTCT--TCATGGCTCC 101
Query 89 AATCACCGTCGGCGATGTTGTACCAGACGGAACAATCTCCTTCTTCGATGAGAATGATCA 148
||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 102 AATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCA 161
Query 149 ACTTCAGACCGCCTCCGTTCACTCTCTCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 208
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 162 GCTTCAGACCGTCTCCGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGT 221
Query 209 TCCTGGTGCTTTCACTCCCACTTGCAGCATGAAGC-ATGTTCCTGGGTTCATTGAGAAAG 267
||||||||||||||||||||| ||||| |||| || |||| ||||| ||||||| |||||
Sbjct 222 TCCTGGTGCTTTCACTCCCACATGCAGTATGA-GCCATGTGCCTGGATTCATTGGGAAAG 280
Query 268 CAGAGGAGCTGAAGTCAAAGGGTGTTGATGACATCATTTGCTTTAGTGTGAACGATCCGT 327
||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
Sbjct 281 CAGAGGAGCTGAAGTCAAAGGGTATTGATGAGATCATTTGCTTTAGTGTGAATGATCCAT 340
Query 328 TTGTGATGAAAGCATGGGGAAAGACATACCCAGAGAACGAGCATGTGAAGTTTGTAGCAG 387
|||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 341 TTGTGATGAAGGCATGGGGAAAAACATATCCAGAGAACAAGCATGTGAAGTTTGTAGCAG 400
Query 388 ATGGTTCTGGAGAATACACACACCTTCTCGGACTTGAGCTTGACCTCAAGGATAAGGGTC 447
|||| |||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||
Sbjct 401 ATGGGTCTGGAGAATACACGCATCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTC 460
Query 448 TTGGTGTTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTCAAGGTGACTGTAGCCA 507
||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 461 TTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTTGATAACCTTAAGGTGACTGTAGCCA 520
Query 508 ATGTCGAATCTGGTGGCGAGTTCACGGTTTCAAGCGCCGAGGATATCCTCAAGGCTCTCT 567
|||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct 521 ATGTTGAATCTGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATTCTCAAGGCTCTTT 580
Query 568 AAGAAACGT-ACCACG-CGTTTGTTGTCTTGTGTATGTAAACCGCTGTATGTGAAGTAGA 625
||||||| | | | || ||||||| ||||| || ||||| ||||||||||||| |||
Sbjct 581 AAGAAACTTTATCGTTTCGCTTGTTGTATTGTGAATCTAAACTGCTGTATGTGAAGAAGA 640
Query 626 GGATT-CTAT 634
| ||| ||||
Sbjct 641 G-ATTTCTAT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5