BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475711
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66070.1 | Symbols: | Translation initiation factor eIF3 su... 1410 0.0
> AT1G66070.1 | Symbols: | Translation initiation factor eIF3
subunit | chr1:24595886-24598518 REVERSE LENGTH=1199
Length=1199
Score = 1410 bits (763), Expect = 0.0
Identities = 940/1018 (92%), Gaps = 41/1018 (4%)
Strand=Plus/Plus
Query 1 TTTAACCTCTGAAGC-AAAACCACAACACATCGGAGGAGATTCCAATCCAACCAAAACGC 59
||||||||||||||| |||||||| ||||||||| || ||| |||||||| |||||||
Sbjct 35 TTTAACCTCTGAAGCAAAAACCAC--CACATCGGA-GA-TTTCTAATCCAACGAAAACGC 90
Query 60 TTCAATCGTCTTCCGATTTCTCTTCCTCTACGAAAAACCCTTTTGGATTCAGACTTTTCT 119
|||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 91 TTCAATTTTCTTGCGATTTCTCTTCCTCTGCGAAAAACCCTTTTGGATTCAGACTTTCCT 150
Query 120 CGGTTTACCAGTTGGACTCAGATAGCAGCTTATATTTGAATCTGATAATTTGCAGCAAAT 179
||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 151 CGGTTTACCAGTTGGACTCAGATAGAAGCTTATATCTGTACCTGATAATTTGCAGCAAAT 210
Query 180 ATGGATGACTGGGAGGACGAGCAAATTGCACCACTTCCAGCAAAAGTTGAGCTTAAAAGT 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 211 ATGGATGACTGGGAGGACGAGAAAATTGCACCACTTCCAGCAAAAGTTGAGCTTAAAAGT 270
Query 240 AACTGggatgatgaagatgtggatgagaatgagattaaggagtcatgggaggatgatgat 299
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 271 AACTGGGATGATGAAGATGTGGATGAGAATGAAATTAAGGATTCATGGGAGGATGATGAT 330
Query 300 gatgaACCTGCTCAGCCGCCTGTTGTAAAGCCTGCTCCGGAGAAGGCTCCTAAGAAAGCA 359
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 331 GATGAACCTGCTCAGCCGCCTGTTATAAATCCTGCTCCGGAGAAGGCTCCTAAGAAAGCA 390
Query 360 GCCCCCAAAACTGTTGAAAAGAAGGGTAAAGCAGTCGAAGTTCC-TA--AAG------AA 410
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 391 GCCCCCAAAACTGTTGAAAAGAAGGGTAAAGCAGTCGAAGTTCCAAAGGAAGCACCAAAA 450
Query 411 G---AACCTCTAGATCCTATAGCGGAGAAACTTCGCCAGCAGAGGCTTGTTGAGGAAGCC 467
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAAAAACCTCTAGATCCTATAGCGGAGAAACTTCGCCAGCAGAGGCTTGTTGAGGAAGCC 510
Query 468 GACTACCGGTCAACTGCTGAGCTCTTTGGAGTGAAGGATGAAGaaaaaaaCCTTGATATG 527
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 511 GACTACCGGGCAACTGCTGAGCTCTTTGGAGTGAAGGATGATGACAAAAACCTTGATATG 570
Query 528 TTTATCCCTAAGTCTGAAAGCGATTTCTTGGAATATGCTGAAATGATTTCTCATAGGATT 587
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 571 TTTATCCCCAAGTCTGAAAGCGATTTTTTGGAATATGCTGAAATGATTTCTCATAGGATT 630
Query 588 AAACCATATGAGAAAAGTTATCACTATATTGCGCTGCTCAAAACAATCATGAGACTTTCA 647
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 631 AAACCATATGAGAAAAGTTATCACTATATAGCGCTGCTCAAAACAATCATGAGACTTTCA 690
Query 648 CTGACCAACATGAAAGCAGCAGATGTTAAAGATGTTGCTTCGTCCATTACAACGATAGCa 707
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTGACCAACATGAAAGCAGCTGATGTTAAAGATGTTGCTTCGTCCATTACAACGATAGCA 750
Query 708 aatgaaaaactaaaggcagagaaagaagctgctgcaggcaaaaagaagggtggaaagaag 767
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 751 AATGAAAAACTAAAGGCAGAGAAAGAAGCTGCTGCGGGAAAAAAGAAAGGTGGAAAGAAG 810
Query 768 aaaCAACTTATTGTAGATAAACCCGATGACGATCTAGTGGCTGGTCCTTATGATGCCATG 827
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 811 AAACAACTTATTGTAGATAAGGCCAATGACGATCTAGTGGCTGGTCCTTATGATGCCATG 870
Query 828 GACGACTTCGACTTCATGTAGATTAAA-GAGCTTTTTGAGCAAATGCAAATTGGATT-GT 885
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 871 GATGACTTCGACTTCATGTAGATTAAAAGAGCTTTTTGAGCAAATGCAAATTGGATTTGT 930
Query 886 CCAGCGTCTATTTTATCATTTATCT-T---T-------------T----CTTAATTTTGG 924
||||||||||||||||||||||||| | | | |||||||||||
Sbjct 931 CCAGCGTCTATTTTATCATTTATCTATCACTCAAAAGAAACACATTTTTCTTAATTTTGG 990
Query 925 TTCGAATAGAGCAAGAAGAAGCCAAATTTCTTGTTATGGAAATATATAGTTGGAACAT 982
|| |||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 991 TTTGAATAGAGCAAGAAGA-GCCAAATTTCTGGTTGCGGAAATATATAGTTGGAACAT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5