BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475712
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66080.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1155 0.0
> AT1G66080.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493);
Has 285 Blast hits to 283 proteins in 133 species: Archae
- 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants -
50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
| chr1:24600217-24601157 REVERSE LENGTH=842
Length=842
Score = 1155 bits (625), Expect = 0.0
Identities = 713/756 (94%), Gaps = 3/756 (0%)
Strand=Plus/Plus
Query 19 aaaaaaaatcaaaattcctaaaaaaaaaaCCCTAAACATCAACAATGTTCGGAGTCGTCT 78
|||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 90 AAAAAAAATCAAAA--CCTTTCAAAAAAACCAAAAAC-TCAACAATGTTCGGAGTCGTCT 146
Query 79 TCCCCAATCGAAGTTTCCCACTCGACATCTCAACCTTCACTCAAATCGACACATTCCACT 138
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 147 TCCCCAATCGAAGTTTCCCAATAGACATCTCAACCTTCACTCAAATCGACACATTCCACT 206
Query 139 GGGTTCTCGATATGAACCATTTCGTCGGTGAAGCATATGATCAAATCTCAGAGATGTGTA 198
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 207 GGGTTCTCGACATGAACCACTTCGTCGGTGAAGCTTATGATCAAATCTCAGAGATGTGTA 266
Query 199 TCTTCTTGTTAAACAATTTCAATCTTCCACCAGATAAAGCTTTAGCTGTTTATCTCCAAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 267 TCTTCTTGTTAAACAATTTCAATCTTCCACCAGATAAAGCTTTAGCTGTTTATGTTCAAT 326
Query 259 CTCCAGGATCAGCTTTTGTCTTCTGTGGTGCTGTTACTTTAGCTAGACCATCAGCTGTGT 318
||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |
Sbjct 327 CTCCAGGATCAGCTTTTGTGTTCTGTGGTGCTGTAACTTTAGCTAGACCTTCTGCTGTTT 386
Query 319 TGTCTCTTCAATGGCCTGAACCTGGTAGTGCTGCTCAGATGCAACTCACGGCGGGTGATT 378
| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 387 TATCACTTCAATGGCCTGAACCTGGTAGTGCAGCGAAGATGCAACTCACGGCGGGTGATT 446
Query 379 CGAGTTCTTTATCGGCGAAAATCGGTGTTTCGGTTGAGGATATAACGGCGTTGAGGTCGT 438
||||||| ||||||||||| |||||||||||||| |||||| || | |||||||||||||
Sbjct 447 CGAGTTCCTTATCGGCGAAGATCGGTGTTTCGGTGGAGGATGTAGCAGCGTTGAGGTCGT 506
Query 439 TGGATGTTGTGGCGGAGAGGAGGATTGAGAAATTAGCTATGAAAGTTGGAGAGAATTTGT 498
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 507 TGGATGTTGTTGCGGAGAGGAGGATTGAGAAATTGGCTATGAAAGTTGGAGAGAATTTGT 566
Query 499 TTAACTTTATGCAGTCTTTTTGTGGTGTTGATGGAAGTAAATTGGTTGTTCCTATGGATA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTAACTTTATGCAGTCTTTTTGTGGTGTTGATGGAAGTAAATTGGTTGTTCCTATGGATA 626
Query 559 TTTTGGATCGTTGGTTTAAGAAGTTTCAGGAGAAAGCTAAACGTGATCCTGATTTCCTCA 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTTTGGATCGTTGGTTTAAGAAGTTTCAGGAGAAAGCTAAACGTGATCCTGATTTCCTCA 686
Query 619 AAAGCTTTGCTTTGTAAGGTTAGAGTTTTTGTAACATTTGATCTTTTGGTTTTATATGAT 678
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||
Sbjct 687 AAAGCTTTGCTTTGTAAGGTTAGCGTTTTTGTAACATTTGATCTTGTGGTTCTATGTGAT 746
Query 679 GAATTGAAGAAGACATTGTAGTTTTACTTGGTTTGTCAATGTTCATTAACTACTTGATCA 738
|||||||| |||| ||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 747 GAATTGAACAAGAGATTGTAGTTTTACTTTGTTTGTCAATGTTTATTAACTAGTTGATCA 806
Query 739 TACTCTGCTTTTAAGCAATTGAAAGTGTTGAACTTT 774
|||||||||||||||||||| |||||||||||||||
Sbjct 807 TACTCTGCTTTTAAGCAATTTAAAGTGTTGAACTTT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5