BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475714
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66120.1 | Symbols: | AMP-dependent synthetase and ligase f... 2494 0.0
AT1G65880.1 | Symbols: BZO1 | benzoyloxyglucosinolate 1 | chr1:... 1179 0.0
AT1G65875.1 | Symbols: | pseudogene, similar to EST AU070346(S... 728 0.0
AT1G68270.1 | Symbols: | AMP-dependent synthetase and ligase f... 529 4e-149
> AT1G66120.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:24612620-24614805 FORWARD LENGTH=1854
Length=1854
Score = 2494 bits (1350), Expect = 0.0
Identities = 1674/1833 (91%), Gaps = 11/1833 (1%)
Strand=Plus/Plus
Query 1 CCACACATACAATATGGATAATCTAGCGTTATGTGAAGCAAACAACGTTCCTCTAACGCC 60
|||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 8 CCACTCATACAAGATGGATAATCTAGTGTTATGTGAAGCAAACAATGTTCCTCTAACGCC 67
Query 61 CATAACGTTCTTGAAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCCATAATCTATGG 120
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||
Sbjct 68 CATAACGTTCTTGAAGAGAGCTTCGGAGTGTTATCCCAACCGAACTTCGATAATCTACGG 127
Query 121 AAAAACTCGGTTCACTTGGCCTCAAACCTATGACCGTTGCTGTCGTCTCGCAGCTTCTCT 180
||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 128 GCAAACTCGCTTCACTTGGCCTCAGACTTATGACCGTTGCTGTCGTCTAGCTGCTTCTCT 187
Query 181 CCTCTCTCTTAACATCACTCGAAACGACGTCGTCTCGATTTTGGCCCCAAACGTACCTGC 240
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 CCTCTCTCTTAACATCACCCGAAACGACGTTGTCTCGATTTTGGCCCCAAACGTACCTGC 247
Query 241 CATATACGAGATGCATTTTAGCGTTCCCATGACCGGAGCTGTACTTAACCCTATTAACAC 300
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 248 CATGTACGAGATGCACTTTAGCGTTCCCATGACCGGAGCCGTACTTAACCCCATTAACAC 307
Query 301 GCGTCTTGACGCCAAAACCATAGCCATCATCCTCCGCCACGCCGAGCCAAAGATCTTATT 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 308 CCGTCTTGACGCCAAAACCATAGCCATCATTCTCCGCCACGCCGAGCCAAAGATCTTATT 367
Query 361 TGTGGACCATGAGTTTGCTCCTTTGATCCAAGAAGTCCTCAGTCTCCTACCCACTGACGA 420
||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| || |
Sbjct 368 TGTGGACTACGAGTTTGCTCCTTTGATCCAAGAAGTCCTCCGTCTCATACCCACTTACCA 427
Query 421 GTCACAACCTCATCCGCGGATCATATTCATTAACGAGATTGATTCCACTACAAATCCTTT 480
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 428 GTCACAACCGCATCCGCGGATCATATTAATTAACGAGATTGATTCCACTACAAAGCCTTT 487
Query 481 TTCCAAGGATTTGGACTACGAGGGTCTCATCCGAAAAGGAGAACCTACGCCCTCCTTGTA 540
|||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 488 CTCCAAGGAGTTAGACTACGAGGGTCTCATCCGAAAAGGAGAACCTACGCCATCCTCCTC 547
Query 541 CGCAAGTATGTTCCTTGTCCACAACGAGCATGACCCTATCTCATTGAACTACACGTCCGG 600
|||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 548 CGCAAGCATGTTCCGTGTCCACAACGAGCATGACCCTATCTCCTTGAACTACACGTCAGG 607
Query 601 TACCACTGCCGACCCAAAAGGTGTGGTGGTTAGCCACCGAGGAGCCTACTTGAGCGCTTT 660
|||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 608 TACCACGGCAGACCCAAAAGGTGTGGTGATTAGCCACCAAGGAGCCTACTTGAGCGCTTT 667
Query 661 GAGCTTGATTATTGGCTGGCAAATGGGGATTTTCCCGGTCTACCTTTGGACTCTACCTAT 720
||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct 668 GAGCTCCATTATTGGCTGGGAAATGGGGATTTTCCCTGTCTACCTCTGGACACTACCTAT 727
Query 721 GTTTCATTGCAATGGATGGACGCTCCCCTGGTCTGTCGCTGCACGTGGCGGTACTAATGT 780
||||||||||||||||||||||| | | ||||| |||||||| ||||| |||||||||||
Sbjct 728 GTTTCATTGCAATGGATGGACGCACACGTGGTCCGTCGCTGCTCGTGGTGGTACTAATGT 787
Query 781 GTGTATGAGGCACGTGACTGCCCCAGAGATCTATAAAAACATAGAATTGCATAGTGTGAC 840
|| || || || || ||||| |||||||||||||| ||||||||||||||| | |||||
Sbjct 788 ATGCATCAGACATGTCACTGCTCCAGAGATCTATAAGAACATAGAATTGCATGGCGTGAC 847
Query 841 GCATATGTCCTGTGTTCCTACGGTCTTTAGGTTTCTCCTTGAAGG-AGATCGAACCAACC 899
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 848 TCACATGTCATGTGTTCCTACGGTCTTTAGGTTTCTCCTTGAAGGAAG-TCGAACCGACC 906
Query 900 AGTCACACAAGTCCCCACCGGTTCAGGTGTTGACCGGAGGTTCTTCGCCCCCGGCTGTCC 959
|||||| ||||||| | ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 907 AGTCACCCAAGTCCTCGCCGGTTCAGGTGTTGACTGGAGGTTCTTCTCCTCCGGCTGTCC 966
Query 960 TTATAAAGAAAGTTCAGCGGTTAGGGTTTCAAGTGATGCATGTCTATGGGCTGACCGAGG 1019
|||||||||||||| ||| | | |||||||| |||||||||| ||||||||| || ||||
Sbjct 967 TTATAAAGAAAGTTGAGCAGCTGGGGTTTCACGTGATGCATGGCTATGGGCTTACAGAGG 1026
Query 1020 CCACTGGTCCGGTTCTCTTTTGTGAATGGCAAGACGAGTGGAACAAACTACCAGAGCATC 1079
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCACCGGCCCGGTTCTCTTTTGTGAATGGCAAGACGAGTGGAACAAACTACCAGAGCATC 1086
Query 1080 AACAAAT-GCAACTACAACAAAGGCAAGGTGTAAGGCACCTAACCCTAGCTGACGTTGAC 1138
|||| || | | |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1087 AACAGATAG-AGCTACAACAAAGGCAAGGTGTAAGGAACCTAACCCTAGCCGACGTTGAC 1145
Query 1139 GTGAAAAACACCAAAACTCTAGAGAGTGTCCCGCGCGACGGTAAGACAATGGGAGAAATT 1198
||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1146 GTGAAGAACACGAAAACTCTAGAGAGTGTCCCACGCGACGGGAAGACAATGGGAGAAATT 1205
Query 1199 GTCATTAAAGGAAGCATTCTTATGAAAGGGTATCTAAAGAACCCTAAAGCAACATCTGAA 1258
|| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1206 GTTATTAAAGGAAGCAGCCTAATGAAAGGGTATCTAAAGAATCCTAAAGCAACATCTGAA 1265
Query 1259 GCCTTTAAACACGGATGG-TTCAACACAGGAGATGTAGGTGTGATTCATCCTGATGGATA 1317
|| ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1266 GCATTTAAACACGGATGGCTT-AACACGGGAGACATAGGTGTGATTCATCCTGATGGATA 1324
Query 1318 TGTAGAGATCAAAGATAGATCCAAAGACATCATCATCTCGGGAGGTGAGAACATCAGCAG 1377
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1325 TGTAGAGATCAAAGATCGATCCAAAGACATCATAATCTCGGGAGGTGAGAACATAAGTAG 1384
Query 1378 TATTGAGGTCGAGAAAGTTCTTTACATGCATCAACAAGTGCTCGAGGCCGCGGTTGTGGC 1437
|||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||
Sbjct 1385 TATTGAGGTCGAGAAAGTTCTTTACATGTATCAGGAAGTGCTCGAGGCTGCGGTTGTAGC 1444
Query 1438 CATGCCTCACCCTATGTGGGGTGAAACCCCGTGTGCATTCGTTGTTCTAAAGAACGGTGA 1497
||||||||| ||| | |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1445 CATGCCTCATCCTCTATGGGGTGAAACCCCGTGTGCGTTTGTTGTTCTAAAGAAGGGTGA 1504
Query 1498 AGAGGAATTGGTGACCAATGAAGGAGATCTCATTGAGTATTGCCGTGAGAATCTGCCACA 1557
||||| ||||||||| | |||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 1505 AGAGGGATTGGTGACTAGTGAAGGAGATCTCATTAAATATTGCCGTGAGAATATGCCGCA 1564
Query 1558 TTTTATGTGTCCGAGGAAAG-TGGTGTTCTTTCAAGAGCTTCCAAAGAATAGTAATGGAA 1616
|||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1565 TTTTATGTGTCCGAA-AAAGGTGGTGTTCTTTCAAGAGCTTCCAAAGAATAGTAACGGAA 1623
Query 1617 AGATCCCCAAGTCTAAGTTGCGAGACGTCGCTAAGGCCTTAGTGGTCAAGGAGGACGATG 1676
|||||| |||||||||||| ||||| |||||||||| || ||||||| |||||||||||
Sbjct 1624 AGATCCTAAAGTCTAAGTTGAGAGACATCGCTAAGGCATTGGTGGTCAGGGAGGACGATG 1683
Query 1677 TCGGTTTCAAGAAAGTTCATCAACGCAGTGTCGAACACGTTAGTTCGAGGCTTTAACGTT 1736
||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1684 CCGGCTCCAAGAAAGTTCATCAACGCAGTATCGAACACGTTAGTTCGAGGCTTTAGCGTT 1743
Query 1737 AC-ATTCATCGATGTGTTTATGTATATGCGTGTGTATTTGGATCGATATGTTTTTTAGTT 1795
|| |||||||||||||||||||||||||||| ||| || |||| ||||||||| ||||||
Sbjct 1744 ACTATTCATCGATGTGTTTATGTATATGCGTATGT-TT-GGATTGATATGTTTCTTAGTT 1801
Query 1796 TGCATGTATAGATTTTTAAATTTACGCTAATAA 1828
| ||||||| |||| ||||||||||||||||||
Sbjct 1802 TACATGTATGGATTGTTAAATTTACGCTAATAA 1834
> AT1G65880.1 | Symbols: BZO1 | benzoyloxyglucosinolate 1 | chr1:24508633-24510742
REVERSE LENGTH=1748
Length=1748
Score = 1179 bits (638), Expect = 0.0
Identities = 1361/1698 (80%), Gaps = 98/1698 (6%)
Strand=Plus/Plus
Query 14 ATGGATAATCTAGCGTTATGTGAAGCAAACAACGTTCCTCTAACGCCCATAACGTTCTTG 73
|||||| || | || ||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 6 ATGGATGATTTGGCATTATGTGAAGCAAACAATGTTCCTCTAACCCCCATGACGTTCTTG 65
Query 74 AAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCCATAATCTATGGAAAAACTCGGTTC 133
||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 66 AAGAGAGCTTCAGAGTGTTATCCAAATCGAACTTCAATAATCTACGGAAAAACTCGTTTC 125
Query 134 ACTTGGCCTCAAACCTATGACCGTTGCTGTCGTCTCGCAGCTTCTCTCCTCTCTCTTAAC 193
||||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 126 ACTTGGCCTCAGACCTATGACCGTTGTTGTCGTCTAGCCGCTTCTCTAATCTCTCTTAAC 185
Query 194 ATCACTCGA-AACGACGTCGTCTCGA-TTTTGGCCCCAAACGTACCTGCCATATACGAGA 251
||| | | | ||||| || || || | || |||| |||||| ||| ||| | || || |
Sbjct 186 ATCTC-CAAGAACGATGTGGTATC-AGTTATGGCTCCAAACACACCCGCCTTGTATGAAA 243
Query 252 TGCATTTTAG-CGTTCCCATGACCGGAGCTGTACTTAACCCTATTAACACGCGTCTTGAC 310
|||| ||| | |||||||||| | |||||||||||||||||||| ||||| ||||| |||
Sbjct 244 TGCACTTT-GCCGTTCCCATGGCTGGAGCTGTACTTAACCCTATCAACACTCGTCTAGAC 302
Query 311 GCCAA-AACCATAGCCATC-ATCCTCCGCCACGCCGAGCCAAAGATCTTATTTGTGGACC 368
| ||| | |||| ||| | ||||||||||||||| |||| ||||||||||| | ||||
Sbjct 303 G-CAACATCCATTGCC-GCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCCTAGACC 360
Query 369 ATG-AG-TTTG-CTCCTTTGATCCA-AG-AAGTCCT-CAGTCTCCTACCCA-CTGACGAG 421
| || |||| || ||| | | || ||| ||| || | | || || |||| ||
Sbjct 361 --GCAGTTTTGAGGCC-TTG-GCTAGAGAAAG-CCTCCA-TTTATTA-TCATCTGAAGAC 413
Query 422 TCACAACCTCATC-CG-CGGATCATATTCATTAACGAGATTGA-TTCCACTACAAA-TCC 477
||| ||||| | | | ||| ||||||| || |||||| || || | ||| ||| |
Sbjct 414 TCA-AACCTAAACTTGCCGG-TCATATTTATCCACGAGAACGATTTTC-CTA-AAAGGGC 469
Query 478 TT-TTTCCAAGGATTTGGACTACGAGGGTCTCATCCGA-AAAGGAGAACCTACGCCCTC- 534
|| || | |||| || ||||||||| ||||||||| | | ||||| |||||||||||
Sbjct 470 TTCATT-CGAGGAGTTAGACTACGAGTGTCTCATCC-AGAGGGGAGAGCCTACGCCCTCG 527
Query 535 CTTGTACGCAAGTATGTTCCTTGTCCACA-ACGAGCATGACCCTATCTCATTGAACTACA 593
| || ||| | ||||||| | | || | |||||||||| || ||||| || |||||||
Sbjct 528 ATGGT-GGCACGCATGTTCCGTATTCA-AGACGAGCATGATCCAATCTCCTTAAACTACA 585
Query 594 CGTCCGGTACCACTGCCGACCCAAAAGGTGTGGTGGTTAGCCACCGAGGAGCCTACTTGA 653
| || |||||||||||||||||||||||||| ||| |||||||||||||||| || |||
Sbjct 586 CATCGGGTACCACTGCCGACCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGT 645
Query 654 GCGCTTTGAGCTTGATTATTGGCTGGCAAATGGGGATTTTCCCGGTCTACCTTTGGACTC 713
|| | || ||| ||||||||| ||| ||||||||| | ||| ||||||||||||||||
Sbjct 646 GCACATTAAGCGCGATTATTGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTC 705
Query 714 TACCTATGTTTCATTGCAATGGATGGACGCTCCCCTGGTCTGTCGCTGCACGTGGCGGTA 773
| ||||||||||||||||||||||||||| | | ||| ||| || ||||| ||||
Sbjct 706 TGCCTATGTTTCATTGCAATGGATGGACGTTTACATGGGGAACCGCGGCGCGTGGGGGTA 765
Query 774 CTAATGTGTGTATGAGGCACGTGACTGCCCCAGAGATCTATAAAAACATAGAATTGCATA 833
| | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 766 CCAGTGTGTGTATGAGGCACGTGACTGCCCCGGAGATCTATAAAAACATAGAAATGCATA 825
Query 834 GTGTGACGCATATGTCCTGTGTTCCTACGGTCTTT-AGGTTTCTCCTTG-AAGGAGA-TC 890
||||| ||||||| |||||||||||||| ||| | |||| | || ||||| | ||
Sbjct 826 ACGTGACACATATGTGTTGTGTTCCTACGGT-TTTCAACATTCTTC-TGAAAGGAAATTC 883
Query 891 GAAC-CAACCAGTCACACAAG-TCCCCACCGGTTCAGGTG-TTGACCGGAGGTTCTTCGC 947
|| ||| ||||| | || || |||||| || ||| || ||||||||||| |||
Sbjct 884 --ACTTGACCTGTCAC-CTAGATCTGGACCGGTCCATGTGCTT-ACCGGAGGTTCACCGC 939
Query 948 C-CCCGGCTGTC-CTTATAAAGAAAGTTCAGCGGTTAGGGTTTCAAGTGATGCATGTCTA 1005
| ||| |||| | ||| | ||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 940 CTCCC-GCTG-CTCTTGTCAAGAAAGTTCAACGGTTGGGGTTTCAAGTGATGCATGCCTA 997
Query 1006 TGGGCTGACCGAGGCCACTGGTCCGGTTCTCTTTTGTGAATGGCAAGACGAGTGGAACAA 1065
||||| |||||||||||||||||| || | |||||||| |||||||| |||||||| |
Sbjct 998 TGGGCAGACCGAGGCCACTGGTCCAATTTTGTTTTGTGAGTGGCAAGATGAGTGGAATAG 1057
Query 1066 ACTACCAGAGCATCAACAAATGCAACTACAA-CAAAGGCAAGGTG-TAAGGCA-CCTAAC 1122
| |||||||| ||||||| ||| || || || | |||||||| | ||| ||| | ||
Sbjct 1058 ATTACCAGAGAATCAACAGATGGAATTAAAAGC-CAGGCAAGG-GATAA-GCATCTTAGG 1114
Query 1123 CCTAGCTGACGTTGACGTGAAAAACACCAAAACTCTAGAGAGTGTC-CCGCGCGACGGTA 1181
|||||||||||||||||||||||||| |||| | | |||||| | |||||||| || |
Sbjct 1115 CCTAGCTGACGTTGACGTGAAAAACAAGGAAACGCAAAAGAGTG-CTCCGCGCGATGGAA 1173
Query 1182 AGACAATGGGAGAAATTGTCATTAAAGGAAGCATTC-TTATGAAAGGGTATCTAAAGAA- 1239
|||||||||||||||| ||||||||||||| | | | ||||||||||||||||| ||
Sbjct 1174 AGACAATGGGAGAAATCCTCATTAAAGGAAGTA-GCATAATGAAAGGGTATCTAAAAAAT 1232
Query 1240 CCCTAAAGCAACATCTGAAGCCTTTAAACACGGATGGTTCAACACAGGAGATGTAGGTGT 1299
||| ||||| |||| ||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 1233 CCC-AAAGCTACATTTGAGGCATTTAAACACGGATGGCTCAACACAGGAGATGTAGGTGT 1291
Query 1300 GATTCATCCTGATGGATATGTAGAGATCAAAGATAGATCCAAAGACATCATCATCTCGGG 1359
|||||| |||||||| | || |||||||||||| | || |||||||| ||||| |||||
Sbjct 1292 GATTCACCCTGATGGGCACGTCGAGATCAAAGATCGGTCAAAAGACATAATCATATCGGG 1351
Query 1360 AGGTGAGAACATCAGCAGTATTGAGGTCGAGAAAGTTCTTTACATGCATC-AACAAGTGC 1418
||| || ||||| || ||| ||||||||||||| |||||||| | | | | || |||| |
Sbjct 1352 AGGCGAAAACATTAGTAGTGTTGAGGTCGAGAATGTTCTTTATAAGTACCCAA-AAGTCC 1410
Query 1419 TCGAGGCCGCGGTTGTGGCCATGCCTCACCCTATGTGGGGTGAAACCCCGTGTGCATTCG 1478
| ||| | || |||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1411 TTGAGACTGCAGTTGTGGCCATGCCTCACCCTACGTGGGGTGAAACCCCGTGTGCGTTTG 1470
Query 1479 TTGTTCTA-AAGA-AC-G-G--TG--A--AGAGGA-ATTG-GT-GACCAAT----GA--A 1519
|||||||| || | | | | | | | || | || | || || ||| || |
Sbjct 1471 TTGTTCTAGAAAAGAGTGAGACTACTATTAAAGAAGATCGTGTTGATAAATTTCAGACCA 1530
Query 1520 G-GAGA----TCTCATTGAGTATTGCCGTGAGAATCTGCCACATTTTATGTGTCCGAGGA 1574
| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1531 GAGAGAGAAATCTGATTGAGTATTGCCGTGAAAATCTGCCACATTTTATGTGTCCGAGAA 1590
Query 1575 AAGTGGTGTTCTTTC-AAGAGCTTCC-AAAGAATAGTAATGGAAAGATCCCCAAGTCTAA 1632
|||||||||| ||| |||| || || ||| || | ||||||||||||| ||| ||||
Sbjct 1591 AAGTGGTGTT-TTTGGAAGAACTGCCCAAA-AACGGGAATGGAAAGATCCTTAAGCCTAA 1648
Query 1633 GTTGCGAGACGTCGCTAA 1650
| | ||||| | |||||
Sbjct 1649 GCTAAGAGACATTGCTAA 1666
> AT1G65875.1 | Symbols: | pseudogene, similar to EST AU070346(S12172)
corresponds to a region of the predicted gene.~similar
to AMP-binding protein. (X94625), blastp match of 57% identity
and 4.5e-137 P-value to GP|6063549|dbj|BAA85409.1||AP000615
EST AU070346(S12172) corresponds to a region of the predicted
gene.~similar to AMP-binding protein. (X94625) {Oryza
sativa (japonica cultivar-group)} | chr1:24504725-24506342
REVERSE LENGTH=1618
Length=1618
Score = 728 bits (394), Expect = 0.0
Identities = 700/848 (83%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 227 CCAAACGTACCTGCCATATACGAGATGCATTTTAGC-GTTCCCATGACCGGAGCTGTACT 285
|||||| |||| ||||| || |||||||||||| || |||||||||||||||||||||||
Sbjct 4 CCAAACATACCGGCCATGTATGAGATGCATTTT-GCTGTTCCCATGACCGGAGCTGTACT 62
Query 286 TAACCCTATTAACACGCGTCTTGACGCCAAAACCATAGCCATCATCCTCCGCCACGCCGA 345
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 63 TAATCCTATTAACACGCGTCTTGACGCTAAAACCATAGCCATCATCCTCCGCCACGCCCA 122
Query 346 GCCAAAGATCTT-ATTTGTGGACCATGA-GTTTGCTCCTTTGATCCAAGAAGTCCTCAGT 403
||||||| | || ||| |||||| | | |||||||||||||||||||||||||||| ||
Sbjct 123 GCCAAAG-TGTTTATTCGTGGACTAC-ACGTTTGCTCCTTTGATCCAAGAAGTCCTCCGT 180
Query 404 CTCCTACCCACT-GACGAGTCACAACCTCATCCGCGGATCATATTCATTAACGAGATTGA 462
||| |||| | | |||| ||| ||| ||| |||| ||||||| ||| | ||||||||
Sbjct 181 CTCTTACC-ATTTGACGCTTCAAAACTTCACCCGCTAATCATATCCATCATTGAGATTGA 239
Query 463 TTCCACTACAAATCCTTTTTCCAAGGATTTGGACTACGAGGGTCTCATCCGAAAAGGAGA 522
||||||||| || | || |||| ||| || |||||||||||||||||||| ||||||||
Sbjct 240 TTCCACTACGAAGCGTTCCTCCATGGAGTTAGACTACGAGGGTCTCATCCGTAAAGGAGA 299
Query 523 ACCTACGCCCTCCTT-GT-ACGCAAGTATGTTCCTTGTCCACAACGAGCATGACCCTATC 580
| ||||| ||| || || | |||||| |||||| ||||||||| ||||||||||| |||
Sbjct 300 TCTTACGCTCTC-TTCGTCA-GCAAGTTTGTTCCGTGTCCACAATGAGCATGACCCGATC 357
Query 581 TCATTGAACTACACGTCCGGTACCAC-TGCCGACCCAAAAGGTGTGGTGGTTAGCCACCG 639
|| ||||| ||||| || || ||||| | |||| ||||||||||||||| |||| |||||
Sbjct 358 TCTTTGAATTACACTTCTGGCACCACGT-CCGAACCAAAAGGTGTGGTGATTAGTCACCG 416
Query 640 AGGAGCCTACTTGAGCGCTTTGAGCTTGATTATTGGCTGGCAAATGGGGATTTTCCCGGT 699
|||||||||||||| ||||||||||| |||| |||||||| ||||||| || | ||||||
Sbjct 417 AGGAGCCTACTTGACCGCTTTGAGCTAGATTCTTGGCTGGGAAATGGGCATGTGCCCGGT 476
Query 700 CTACCTTTGGACTCTACCTATGTTTCATTGCAATGGATGGACGCTCCCCTGGTCTGTCGC 759
|||||| ||||| || || ||||||||| | ||||| ||| ||| | | ||||| |||||
Sbjct 477 CTACCTCTGGACCCTTCCAATGTTTCATGGAAATGGGTGGGCGCACACATGGTCCGTCGC 536
Query 760 TGCACGTGGCGGTACTAATGTGTGTATGAGGCACGTGACTGCCCCAGAGATCTATAAAAA 819
||||||||| || || ||||| || || || | ||||| || ||| || ||||| ||
Sbjct 537 TGCACGTGGGGGCACCAATGTATGCATCAGAAATGTGACGGCTGTAGAAATATATAAGAA 596
Query 820 CATAGAATTGCATAGTGTGACGCATATGTCCTGTGTTCCTACGGTCTTTAGGTTTCTCCT 879
||||| ||||||| | |||||||| ||||| |||||||| || || ||||| |||||||
Sbjct 597 CATAGGATTGCATGGCGTGACGCACATGTCTTGTGTTCCAACTGTATTTAGAATTCTCCT 656
Query 880 TGAAGGA-GATCGAACCAACCAGTCACACAAGTCCCCACCGGTTCAGGTGTTGACCGGAG 938
|||||| | ||||||||||||||||||||||||| || |||| ||| | || || |
Sbjct 657 CGAAGGAAG-TCGAACCAACCAGTCACACAAGTCCTTGCCTGTTCGGGTACTAACTGGTG 715
Query 939 GTTCTTCGCCC-CCGGCTGTC-CTTATAAAGAAAGTTCAGCGGTTAGGGTTTCAAGTGAT 996
|||| || ||| ||||||| | ||| | |||| ||| | ||||| |||||||| |||||
Sbjct 716 GTTCATC-CCCGCCGGCTG-CACTTCTTGAGAAGGTTGAACGGTTGGGGTTTCAGGTGAT 773
Query 997 GCATGTCTATGGGCTGACCGAGGCCACTGGTCCGGTTCTCTTTTGTGAATGGCAAGACGA 1056
||| || ||||| || || ||||| | ||| | | ||||| |||||| ||||| |||||
Sbjct 774 GCACGTATATGGACTTACTGAGGCTTCCGGTGCAGCTCTCTATTGTGAGTGGCAGGACGA 833
Query 1057 GTGGAACA 1064
||||||||
Sbjct 834 GTGGAACA 841
Score = 556 bits (301), Expect = 2e-157
Identities = 576/702 (82%), Gaps = 45/702 (6%)
Strand=Plus/Plus
Query 1067 CTACCAGAGCATCAACAAATGCAA-CT-ACAA-CAAAGGCAAGGTGTAAGGCACCTAACC 1123
|||||| |||||||||| ||| || || | || | ||||||||| |||||| || |||||
Sbjct 926 CTACCAAAGCATCAACAGATG-AAGCTGA-AAGC-AAGGCAAGGGGTAAGGAACATAACC 982
Query 1124 CTAGCTGACGTTGACGTGAAAAACACCAAAACTCTAGAGAGTGTCCCGCGCGACGGTA-A 1182
|||| ||| ||||||||||| ||||| ||||||| ||||||||||| |||||||| | |
Sbjct 983 CTAGATGAAGTTGACGTGAAGAACACGAAAACTCGGGAGAGTGTCCCACGCGACGGGATA 1042
Query 1183 GACAATGGGAGAAATTGTCATTAAAGGAAGCATTCTTATGAAAGGGTATCTAAAGAACCC 1242
|| ||||||||||||||| | ||||||| || |||||||||||||| ||||||||||
Sbjct 1043 -ACGATGGGAGAAATTGTCCTCAAAGGAAATATAGTTATGAAAGGGTATTTAAAGAACCC 1101
Query 1243 TAAAGCAACATCTGAAGCCTTTAAACACGGATGGTTCAACACAGGAGATGTAGGTGTGAT 1302
||||||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 1102 TAAAGCAACATCTGAGGTGTTTAAACACGGATGGCTCAACACTGGAGACATAGGTGTGAT 1161
Query 1303 TCATCCTGATGGATATGTAGAGATCAAAGATAGATCCAAAGACATCATCATCTCGGGAGG 1362
|||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1162 TCATCCTGATGGGCACATAGAGATCAAAGATCGATCCAAAGACATTATCATCTCGGGAGG 1221
Query 1363 TGAGAACATCAGCAGTATTGAGGTCGAGAAAGTTCTTTAC-ATGCATCA-ACAAGTGCTC 1420
||||||||| || |||||||||||||||| |||||||||| | ||| || | ||||||||
Sbjct 1222 TGAGAACATAAGTAGTATTGAGGTCGAGAGAGTTCTTTACGA-GCACCAGA-AAGTGCTC 1279
Query 1421 GAGGCCGCGGTTGTGGCCATGCCTCACCCTATGTGGGGTGAAACCCCGTGTGCATTCGTT 1480
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||
Sbjct 1280 GAGGCCGCGGTTGTGGCCATGCCTCACCCTTTGTGGGGTGAAACGCCGTGTGCCTTTGTT 1339
Query 1481 GTTCTAAA----G---AA-C--------G-G-T-G--AAGAGGAATTGGTGACCAATGAA 1519
||| |||| | || | | | | | || |||||| |||||| || |||
Sbjct 1340 GTTTTAAACCAAGGTGAAACCAATCAAAGAGATCGTGAAAAGGAATCGGTGACGAAAGAA 1399
Query 1520 GGAGATCTCATTGAGTATTGCCGTGAGAATCTGCCACATTTTATGTGTCCGAGGAAAGTG 1579
|||||| | ||| ||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1400 GGAGATTTGATTAAGTATTGCCGTGAGAATATGCCGCATTTTATGTGTCCGAGGAAAGTA 1459
Query 1580 GTGTTCTTTCAAGAGCTTCCAAAGAATAGTAATGGAAAGATCCCCAAGTCTAA---G--T 1634
|||||||| |||| || ||||||||| | || |||||||| | ||| |||| | |
Sbjct 1460 GTGTTCTTGGAAGAACTGCCAAAGAATGGGAACGGAAAGATACTTAAGCCTAATCTGAGT 1519
Query 1635 -TGCGAGACGTCGCTAA-GGCCTTAGTGGTCAAGGAGGACGATGTCGGTTTCAAGAAAGT 1692
|| |||| ||||||| || || || ||| | ||||||||| | ||| |||||||||
Sbjct 1520 CTGAGAGATATCGCTAAAGGT-TTGGTTGTCGATGAGGACGATACCCGTTCCAAGAAAGT 1578
Query 1693 TCATCAACGCAGTG-TCGAACA-CGTTAGTTCGAGGCTTTAA 1732
||| |||| ||| | |||| ||||||||| |||||||||
Sbjct 1579 TCAAGGACGCGGTGGT--AACAACGTTAGTTCCAGGCTTTAA 1618
> AT1G68270.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:25588191-25590254 REVERSE LENGTH=1608
Length=1608
Score = 529 bits (286), Expect = 4e-149
Identities = 606/753 (80%), Gaps = 51/753 (7%)
Strand=Plus/Plus
Query 916 ACCGGTTCAGGTGTTGACCGGAGGTTCTTCGC-CCCCGGCTGTC-CTTATAAAGAAAGTT 973
|||||| || || ||||||||||||| | | |||| |||| | ||| | |||||||||
Sbjct 813 ACCGGTCCATCTGATGACCGGAGGTTCACCTCTCCCC-GCTG-CTCTTGTCAAGAAAGTT 870
Query 974 CAGCGGTTAGGGTTTCAAGTGATGCATGTCTATGGGCTGACCGAGGCCACTGGTCCGGTT 1033
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | |
Sbjct 871 CAGCGGTTAGGGTTTCAAGTTCTGCATGTCTATGGCCTGACGGAGGCCACTGGTCCAGCT 930
Query 1034 CTCTTTTGTGAATGGCAAGACGAGTGGAACAAACTACCAGAGCATCAACAAATGCAACT- 1092
||||||||||| ||||||||||||||||||| | || ||||| ||||||||||| | ||
Sbjct 931 CTCTTTTGTGAGTGGCAAGACGAGTGGAACAGATTAACAGAGAATCAACAAATGGAGCTG 990
Query 1093 ACAA-CAAAGGCAAGGTG-TAAGGCACCT-AACCCTAGCTGACGTTGACGTGAAAAACAC 1149
| || ||| ||||||| | || |||| | || | ||||||| ||||| ||||| |||
Sbjct 991 A-AAGCAA-GGCAAGG-GCTA-GGCATATTAAGCGTAGCTGAAGTTGATGTGAAGTACAA 1046
Query 1150 CAAAACTCTAGAGAGTGTCCCGCGCGACGGTAAGACAATGGGAGAAATTGTCATTAAAGG 1209
| |||||| |||||||||||| | ||| || ||||||||||||||||||||||| |||||
Sbjct 1047 CGAAACTCAAGAGAGTGTCCCACACGATGGGAAGACAATGGGAGAAATTGTCATGAAAGG 1106
Query 1210 AAGCATTCTTA-TGAAAGGGTATCTAAAGAAC-CCTAAAGCAACATCTGAAGCCTTTAAA 1267
|| || | || ||||||||||||||||||| || ||||| |||| |||||| ||||||
Sbjct 1107 AAACAA-CATAATGAAAGGGTATCTAAAGAATTCC-AAAGCTACATTTGAAGCGTTTAAA 1164
Query 1268 CACGGATGGTTCAACACAGGAGATGTAGGTGTGATTCATCCTGATGGATATGTAGAGATC 1327
||||||||| ||||||| ||||| |||||||| || |||||||||||| | | ||||||
Sbjct 1165 CACGGATGGCTCAACACTGGAGACGTAGGTGTAATCCATCCTGATGGACACATCGAGATC 1224
Query 1328 AAAGATAGATCCAAAGACATCATCATCTCGGGAGGTGAGAACATCAGCAGTATTGAGGTC 1387
|||||| | |||||||| || || || ||||| || || || ||||||||| |||| |||
Sbjct 1225 AAAGATCGGTCCAAAGATATAATAATATCGGGTGGCGAAAATATCAGCAGTGTTGAAGTC 1284
Query 1388 GAGAA-AGTTCTTTACATGCATC-AACAAGTGCTCGAGGCCGCGGTTGTGGCCATGCCTC 1445
||||| | ||||||||| ||| | || | ||| | |||| || || |||||||||||||
Sbjct 1285 GAGAATA-TTCTTTACAAGCACCCAAGA-GTGTTTGAGGTTGCCGTCGTGGCCATGCCTC 1342
Query 1446 ACCCTATGTGGGGTGAAACCCCGTGTGCATTCGTTGT-T--CTAAAGAACG-G--T---- 1495
||| | |||||||||||||||||||||||||| |||| | | |||| || | |
Sbjct 1343 ACCGTGTGTGGGGTGAAACCCCGTGTGCATTCATTGTGTTACAAAAGGGCGAGACTAATA 1402
Query 1496 --GAAGA-G--GAAT-TG-----GTGACCA-AT-GAAGGAGATCTCATTGAGTATTGCCG 1542
||||| | |||| | ||| ||| | ||| || || | ||||| ||||||||
Sbjct 1403 AAGAAGATGATGAATATAAATTTGTGGCCAGAGAGAAAGA-AT-TGATTGACTATTGCCG 1460
Query 1543 TGAGAATCTGCCACATTTTATGTGTCCGAGGAAAG-TGGTGTTCTTTC-AAGAGCTTCC- 1599
|||||||||||||||||||||||||||||| |||| |||| || ||| |||| || ||
Sbjct 1461 TGAGAATCTGCCACATTTTATGTGTCCGAG-AAAGGTGGTATT-TTTGGAAGAACTGCCC 1518
Query 1600 AAAGAATAGTAATGGAAAGATCCCCAAGTCTAA 1632
||| ||| | ||||||||||||| ||| ||||
Sbjct 1519 AAA-AATGGAAATGGAAAGATCCTTAAGCCTAA 1550
Score = 496 bits (268), Expect = 4e-139
Identities = 633/804 (79%), Gaps = 45/804 (6%)
Strand=Plus/Plus
Query 14 ATGGATAATC-TAGCGTTATGTGAAGCAAACAACGTTCCTCTAACGCCCATAACGTTCTT 72
|||||||| | | | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGATAA-CATGGAGTTATGTGAAGCAAACAACGTTCCTCTAACGCCCATAACTTTCTT 59
Query 73 GAAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCCATAATCTATGGAAAAACTCGGTT 132
|||||||||||| |||||||||||||||||||| || ||||| || ||| ||||||| ||
Sbjct 60 GAAGAGAGCTTCAGAGTGTTATCCCAATCGAACATCAATAATTTACGGACAAACTCGTTT 119
Query 133 CACTTGGCCTCAAACCTATGACCGTTGCTGTCGTCTCGCAGCTTCTCTCCTCTCTCTTAA 192
||||||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||
Sbjct 120 CACTTGGCCACAAACCTATGACCGTTGTTGTCGTCTAGCCGCTTCTCTCATCTCTCTTAA 179
Query 193 CATCACTCGA-AACGACGTCGTCTC-GATTTTGGCCCCAAACGTACCTGCCATATACGAG 250
|||| | | | ||||| || || || | || ||||||||||| ||| ||||| || |||
Sbjct 180 CATCGC-CAAGAACGATGTGGTATCCG-TTGTGGCCCCAAACACACCAGCCATTTATGAG 237
Query 251 ATGCATTTTAGC-GTTCCCATGACCGGAGCTGTACTTAACCCTATTAACACGCGTCTTG- 308
||||| ||| || ||||||||| | |||||||| ||||||||||| || || ||| |||
Sbjct 238 ATGCACTTT-GCCGTTCCCATGGCTGGAGCTGTCCTTAACCCTATCAATACTCGT-TTGG 295
Query 309 ACGCCAAAACC-AT-AGCCATCA-TCCTCCGCCACGCCGAGCCAAAGATCTTATTTGTGG 365
|||| || | | || | ||| || | |||||||||||| |||| ||||| ||||| |
Sbjct 296 ACGC-AACATCTATTA-CCA-CAATTCTCCGCCACGCCCAGCCCAAGATATTATTCATAC 352
Query 366 ACC-ATGAGTTTGCTCCTTTGA-TCCAAGAAGTCCTC-AGTCTCCTACCCAC-TGACGAG 421
||| | | |||| || ||| || | ||| ||||| | ||| ||| | | ||||||
Sbjct 353 ACCGAA-ACTTTGAGCCCTTGGCTCGA-GAAATCCTCCA-TCTACTATC-ATGTGACGAC 408
Query 422 TCACAACCTCATCC-GC-GGATCATATTCATTAACGAGATTGA-TTCCACTACAAATCCT 478
| ||||| | | | || || ||||||| ||| ||||| | | |||| ||| ||| |
Sbjct 409 TTACAAC-TAAACTTGCTGG-TCATATTTATTGACGAG-TACAATTCCGCTA-AAAGGGT 464
Query 479 TTT-TCCAAGGATTTGGACTACGAGGGTCTCATCCGAAAAGG-AGAACCTACGCCCTCC- 535
|| ||| |||| || ||||||||| ||||||| | | | || ||| |||||| | |||
Sbjct 465 TTCATCCGAGGAGTTAGACTACGAGAGTCTCATTC-AGATGGGAGAGCCTACGTC-TCCG 522
Query 536 TTG-TACGCAAGTATGTTCCTTGTCCACAACGAGCATGA-CCCTATCTCATTGAACTACA 593
||| | | || |||||||| | | || || ||||| || ||| ||||| | |||||||
Sbjct 523 TTGGTT-GAAAATATGTTCCGTATACAAAATGAGCAAGATCCC-ATCTCCCTAAACTACA 580
Query 594 CGTCCGGTACCACTGCCGACCCAAAAGGTGTGGTGGTTAGCCACCGAGGAGCCTACTTGA 653
|||| |||||||| || |||||||||||||||||| ||||||| |||||||| || ||||
Sbjct 581 CGTCAGGTACCACGGCTGACCCAAAAGGTGTGGTGATTAGCCATCGAGGAGCATATTTGA 640
Query 654 GCGCTTTGAGCT-TGATTATTGGCTGGCAAATGGGGATTTTCCCGGTCTACCTTTGGACT 712
| | || || | | |||||||| ||| ||||| | | | ||| ||||||||||||| |
Sbjct 641 CCTCGTT-AGGTGTAATTATTGGTTGGGAAATGAGTACCTGCCCTGTCTACCTTTGGATT 699
Query 713 CTA-CCTATGTTTCATTGCAATGGATGGACGCTCCCCTGGTCTGTC-GCTGCACGTGGCG 770
| ||||||||||||||||||||||||||| | | ||| | | || || || || |
Sbjct 700 TTTGCCTATGTTTCATTGCAATGGATGGACGTTTACATGGGCAA-CAGCAGCGCGCGGGG 758
Query 771 GTACTAATGTGTGTATGAGGCACG 794
| || |||||||||||||| ||||
Sbjct 759 GCACCAATGTGTGTATGAGCCACG 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90461382090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5