BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475716
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 | chr1:2461... 1467 0.0
> AT1G66140.1 | Symbols: ZFP4 | zinc finger protein 4 | chr1:24619837-24622004
REVERSE LENGTH=1250
Length=1250
Score = 1467 bits (794), Expect = 0.0
Identities = 1074/1198 (90%), Gaps = 64/1198 (5%)
Strand=Plus/Plus
Query 1 Actctctcctcttttgtgctcccaaaccaaacat---a-t--c------a--ctcact-t 45
|||||||||||||||||||||||||||||||||| | | | | ||| || |
Sbjct 1 ACTCTCTCCTCTTTTGTGCTCCCAAACCAAACATAACACTCACAATTTAACTCTCTCTGT 60
Query 46 ctctctctcatatctctcacttcttctctttcttTTTAAGTCCCCAAAAATAACCTCGCT 105
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTCTCTCTCATATCTCTCACTTCTTCTCTTTCTTTTTAAGTCCCC-AAAATAACCTCGAG 119
Query 106 ATCGATGGACTCAAATCTGTTCATAACTCCTAGTTCTTCTCTCAAATTCCAAGCCTTTGT 165
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||
Sbjct 120 ATCGATGGACTCAAATCTGTTCATAACTCCCACTTCTTCTCTCAAATCCCAAGCCTTGGT 179
Query 166 CTCCTCATCATCCTAACTAT-GCAGAAAACGaaaaaaaCAACGTTAAGTTTCTGCCAGAA 224
||| |||||||||||||||| |||||| | |||||||||||| |||||||||||| ||
Sbjct 180 CTCTTCATCATCCTAACTATATAAGAAAAAG-AAAAAACAACGTAAAGTTTCTGCCATAA 238
Query 225 ATCATGAGACCAATATTAGACCTCGAAGTTGAAGCTTCATCGGACAGTAGCAGCAGCCAA 284
||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 239 ATCATGAGACCAATATTAGACCTCGAAATTGAAGCTTCATCGGGCAGTAGTAGCAGCCAA 298
Query 285 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTGGCCTCAAACTTGTCTCCGGTTGGGGAAGATTACAAACCAATCTCGCTGAATCTTAGC 358
Query 345 CTCTCTTT------CAACAACAAC---AATCTTGATCTTGAATCATCGTCTTTGACGTTG 395
||| ||| |||||||||| ||||| |||||||||||||||||||||||| ||
Sbjct 359 CTCAGTTTCAACAACAACAACAACAATAATCTGGATCTTGAATCATCGTCTTTGACGCTG 418
Query 396 CCACTTTCGAGCACGAGTGAGAGTAGCAACCCGGAACAGCAACAGCAACAACAACCGTCA 455
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 419 CCACTTTCGAGCACGAGTGAGAGTAGTAACCCGGAGCAGCAGCAGCAACAACAACCATCT 478
Query 456 GTATCGAAGCGAGTCTTTTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCC 515
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTATCAAAGAGAGTCTTCTCTTGTAACTACTGCCAAAGGAAGTTCTATAGCTCTCAAGCG 538
Query 516 CTTGGTGGTCACCAAAACGCTCATAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 575
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 CTAGGTGGTCACCAAAACGCTCACAAACGTGAGAGAACACTCGCCAAACGCGCTATGCGT 598
Query 576 ATGGGTCTCGCTGGGGTCTTCCCCAGTAGAGGATCAAGTAGTAGCTA--C-GCGGCTGCC 632
|||||||| ||||||||||||||| |||||||||||||||| | || | || ||||||
Sbjct 599 ATGGGTCTTGCTGGGGTCTTCCCCGGTAGAGGATCAAGTAGCAATTATGCGGCTGCTGCC 658
Query 633 ACAGCAGCCGCTCTCTCGTGTTTGCCACTTCATGGAAGCGGAAACGGTAATATGACATCA 692
|||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct 659 ACAGCAGCCGCTCTCTCGTGTTTGCCGCTTCACGGAAGCGGAAACGGGAACATGACATCG 718
Query 693 TTCAGGACTTTGGGAATTCGGGCACATGCCTCGTCCCACGACGTCGGCATGACAAGGCAG 752
||||||||||||||||| ||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 719 TTCAGGACTTTGGGAATCCGGGCACATTCCTCGGCGCACGACGTCAGCATGACAAGGCAG 778
Query 753 ACACCAGAAACGA-TTATTAGAAATATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 811
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 ACACCAGAAAC-ACTTATTAGAAACATTGCCAGGTTCAACCAGGGGTATTTCGGTAATTG 837
Query 812 TATACCTTTTTACGTTGAGGACGACGAGGCCGAGATGCTCTGGCCAGGGAGTTTCAGGCA 871
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 838 TATACCTTTTTACGTGGAGGACGACGAGGCCGAGATGCTCTGGCCGGGGAGTTTCCGGCA 897
Query 872 AGCAACGGATGCGGTTGCGGTTGAAGCGGGTAATGATGATTTAGGTGAAAGAAAAATGGA 931
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 AGCTACGAATGCGGTTGCGGTTGAAGCGGGTAATGATAATTTAGGTGAAAGAAAAATGGA 957
Query 932 TTTCTTGGACGTCAAGCAAGCGGTGGATATGGAGAGTTCTCTTCCAGATCTAACCTTGAA 991
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 958 TTTCTTGGACGTCAAGCAAGCGATGGATATGGAAAGTTCTCTTCCAGATCTAACCTTGAA 1017
Query 992 ACTTTGAG----C------------------TTT-CTGAATGTGGATTCTTAATTTGGTT 1028
||||||| | ||| |||||| |||||||||||||||| |
Sbjct 1018 GCTTTGAGCTTTCGTTTTTTTTGTTTTTTTTTTTGCTGAATTTGGATTCTTAATTTGG-T 1076
Query 1029 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCCGATATGT 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 GCATCAGCTTCATAACTCTATTATGTACAGTGAGAGTTTCACAAACCATTTCTGATATGT 1136
Query 1089 TATCATTATATGGTCACTATCGATTGATCGACTAAAAGTCAATTCTAGTGTTTGCTTA 1146
||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 TAT--------GGTCACTATCGATTGATCGACCAAAAGTCAATTCTAGTGTTTGCTTA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5