BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475721
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1160 0.0
> AT1G66190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G37550.1);
Has 30 Blast hits to 30 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 19; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:24652795-24653938
REVERSE LENGTH=1144
Length=1144
Score = 1160 bits (628), Expect = 0.0
Identities = 798/876 (91%), Gaps = 27/876 (3%)
Strand=Plus/Plus
Query 1 ATGCTCCCATTTGCCAACTACTACATTTCTTCACCATCTACGTC-C-GAGAAGAACATTA 58
|||||||||||||||||||||||||||||||||||||| |||| | |||||| | | |
Sbjct 98 ATGCTCCCATTTGCCAACTACTACATTTCTTCACCATC--CGTCTCGGAGAAG-A-A-TG 152
Query 59 ATAACAACAACGACGGCGGCAACAAGAGGAGGAAGAA-AAAGCGGGCGATGACGGTTTAT 117
|| ||||||| | || ||||||||||||||||| ||| |||||||||| |||||||
Sbjct 153 CTATCAACAAC-A--ACGTAAACAAGAGGAGGAAGAAGAAA-CGGGCGATGATGGTTTAT 208
Query 118 GGTggaggaggaggaggaggagATGATTTAGCGGCGGTGAAGGCGGCGGCGTGGGCTTGG 177
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 209 GGT---GGAGGAGGAGGAGGAGATGATTTAGCGGTGGTGAAGGCGGCGGCGTGGGCTTGG 265
Query 178 TACCTACGGAAAGAAGGCAAACCGATCATGAGAGAGTTTGATCTAACAAGAGCATC-AAG 236
||| |||||||||||||||||||||| ||||||||||||||| |||| |||||| | |||
Sbjct 266 TACTTACGGAAAGAAGGCAAACCGATTATGAGAGAGTTTGATGTAACGAGAGCA-CAAAG 324
Query 237 AACACCTCGACCTTCACGGTACAAGATCGAAGCAACGAAGAACAAGATCCTCTGTGAGAA 296
|| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 325 AATACCTCGACCTTCACGGTACAAGATCGAAGCCACGAAGAACATGATCCTCTCTGAGAA 384
Query 297 TAGGGTTTTGGCCGAGAATAGGG--T-TTCTACTAAGTCTCCACTTTGGTACACGAATTA 353
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 385 TAGGGTTTTGGCCGAGAATAGGGTTTCTTCTACTAAGTCTCCGCTTTGGTACACGAATTA 444
Query 354 CCCTTTTCGTGGGGATCAAGAAACGCAGTACTCTCGTCTTCTTGACACTTACGAGATCAA 413
| ||||||||||||||||||||| | ||||||||||||||||| |||||||| | |||
Sbjct 445 TCAATTTCGTGGGGATCAAGAAACGTATTACTCTCGTCTTCTTGATACTTACGAAACCAA 504
Query 414 GAACATCTCAAAGAGGCTTAACATTGATGATACTAGTTTCTCCGCGAGTTTAAGCAGTGT 473
||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 505 GAACATCTCCAAGAGGCTTAACATTGATGATTCTAGTTTCTCCACGAGTTTAAGTAGTGT 564
Query 474 TTTGCGGCACAACGGCGATGATCATCATAATCATAATCGTAATGATGATTATGGTTTTGA 533
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTTGAAGCACAACGGCGATGATCATCATAATCATAATCGTAATGATGATTATGGTTTTGA 624
Query 534 TGATCATGGTTTGCTGCAGAAGAGAAATGGTAAAGATAATAACAATACTACTAGAAGTAG 593
||||||||||||| || ||||||||||||||| || | ||| | ||||||||||||||
Sbjct 625 TGATCATGGTTTGTTGAAGAAGAGAAATGGTAGTGACAGTAATACTACTACTAGAAGTAA 684
Query 594 AACAAACAATGACAAGAGTTATAATGGTGGCTTCATGAAAAAAGTGAGCAAGAGAAGTTT 653
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 685 AACAAATAATGACAAGAGTTATAATGGTGGCTTCATGAAAAAGGTGAGCAAGAGAAGTTT 744
Query 654 GTGGAAGGGAATGATTGTGATGGGTCCAGGGTCGACGGTTTGTGGGAGAAGTGATGACGT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATGGAAGGGAATGATTGTGATGGGTCCAGGGTCGACGGTTTGTGGGAGAAGTGATGACGT 804
Query 714 GGCTTCTCAGGCCGGCAGGAGAACGGTAAAGGTTGCGGCGGCGGCAGAGGCTCTGGTCAG 773
|||||| |||||||| ||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 805 GGCTTCGCAGGCCGGAAGGAGAACGGTTAAGGTTGCGGTGGCTGCAGAGGCTCTGGTCAG 864
Query 774 GTCGGCGGCAAGTGG------CAAGACTCAAAGTGGTCGTCGCTAACTTTAGTGGTTTTT 827
||||||||||||||| ||||||||||||||||| | |||||||||||||||| ||
Sbjct 865 GTCGGCGGCAAGTGGGAGTGGCAAGACTCAAAGTGGTCATTGCTAACTTTAGTGGTTCTT 924
Query 828 TGGGTTGTTGAACTTTGAAGACTTTTTAGGCTGGAA 863
|||||||||||||||||||||||||||||||||||
Sbjct 925 -GGGTTGTTGAACTTTGAAGACTTTTTAGGCTGGAA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5