BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475723
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone ... 1639 0.0
AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutam... 1247 0.0
AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synt... 712 0.0
> AT1G66200.3 | Symbols: GSR2, GLN1;2 | glutamine synthase clone
F11 | chr1:24655499-24657683 REVERSE LENGTH=1282
Length=1282
Score = 1639 bits (887), Expect = 0.0
Identities = 1131/1240 (91%), Gaps = 51/1240 (4%)
Strand=Plus/Plus
Query 1 GTACTACCACAACCACGAACTCCAAAACATCATCTCA-T-A-AACCA-AAAACACACAAT 56
|||||||||||||||||||||| ||| |||||||||| | | || | ||||||||||||
Sbjct 46 GTACTACCACAACCACGAACTCTAAAGCATCATCTCATTAACAAAAATAAAACACACAAT 105
Query 57 CTC---A------A------ATTACAAAGAATCAATCTTCTTGTTCCTTTTTGCAACCAT 101
||| | | |||||||||| |||||||||||||| ||| ||||||||||
Sbjct 106 CTCAAGATTTTCTACTTCTTATTACAAAGATTCAATCTTCTTGTTTCTTCTTGCAACCAT 165
Query 102 GAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGAAAAGATCATCGC 161
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 166 GAGTCTTCTTGCAGATCTTGTTAACCTTGACATCTCAGACAACAGTGAAAAGATCATCGC 225
Query 162 TGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATC 221
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 226 TGAATACATATGGGTTGGTGGTTCTGGTATGGACATGAGAAGCAAAGCCAGGACTCTCCC 285
Query 222 AGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATGGTTCAAGCACTG 280
|| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 286 TGGACCTGTGACCGATCCATCAAAACTTCC-AAAGTGGAACTATGATGGTTCAAGCACTG 344
Query 281 GTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGATTTTCAAAGATC 340
|||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 345 GTCAAGCTCCTGGTCAAGACAGTGAAGTGATCTTATACCCTCAAGCAATTTTCAAAGATC 404
Query 341 CGTTCCGTAGAGGCAACAACATTCTT------GTT----AT-G-TGTGAT--GCTTAC-- 384
| |||||||||||||||||||| ||| ||| || | | |||| | |||
Sbjct 405 CATTCCGTAGAGGCAACAACATCCTTATTAACGTTTTTTATCGGTTTGATCAGGTTATGT 464
Query 385 ---A--CT--C-CT---GCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTG 433
| || | || ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 465 GTGATGCTTACACTCCAGCGGGAGAGCCAATCCCTACTAACAAGCGACATGCTGCGGCTG 524
Query 434 AGATCTTTGCTAACCCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 493
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 525 AGATCTTTGCTAACCCTGATGTTATTGCTGAAGTGCCATGGTATGGAATCGAACAAGAAT 584
Query 494 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTACCCTG 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 585 ACACTTTGTTGCAGAAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTTCCCTG 644
Query 554 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GCCCTCAGGGACCATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTG 704
Query 614 TTGATGCTCACTACAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 673
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTGATGCTCACTACAAAGCCTCTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAG 764
Query 674 AAGTCATGCCGGGTCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTG 733
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 765 AAGTCATGCCGGGACAATGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTGCTG 824
Query 734 ATGAAGTGTGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 793
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ATGAAATATGGATCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTG 884
Query 794 TATCTTTTGACCCGAAACCGATCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACT 853
||||||||||||| ||||| || || ||||| ||||| |||||||||||||||||||| |
Sbjct 885 TATCTTTTGACCCAAAACCTATTCCTGGTGACTGGAATGGAGCTGGTGCTCACACCAATT 944
Query 854 ACAGTACTAAATCGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGA 913
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 945 ACAGTACTAAATCAATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATCGAGA 1004
Query 914 AGCTCGGACTA-AGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGT 972
|||| || || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1005 AGCTTGG-CTTGAGACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGTCGT 1063
Query 973 CTCACGGGACACCATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1032
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CTCACGGGACACCATGAAACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGT 1123
Query 1033 GGAGCATCGATCCGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGAT 1092
|| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1124 GGTGCATCGATCCGAGTAGGACGTGACACCGAGAAAGAAGGGAAGGGATACTTTGAGGAT 1183
Query 1093 AGGAGGCCAGCTTCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACA 1152
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1184 AGGAGGCCAGCTTCAAACATGGACCCTTACGTTGTTACTTCCATGATTGCAGAGACTACA 1243
Query 1153 CTCCTCTGGAAACCTTGAAAAGGATGATCCATAAATCTTG 1192
||||||||||| |||||||| ||||||||| ||| |||||
Sbjct 1244 CTCCTCTGGAACCCTTGAAA-GGATGATCCGTAACTCTTG 1282
> AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine
synthase clone R1 | chr5:14933336-14935841 REVERSE LENGTH=1494
Length=1494
Score = 1247 bits (675), Expect = 0.0
Identities = 950/1085 (88%), Gaps = 10/1085 (1%)
Strand=Plus/Plus
Query 91 TTTGCAACCATGAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGA- 149
|||| | ||||||||||| || ||||||| | |||||| ||||||||||| || |||
Sbjct 177 TTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGAC 236
Query 150 AAAGATCATCGCTGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGC 209
||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 237 AAA-ATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGC 295
Query 210 CAGGACTCTATCAGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATG 268
|||||||||| | || || ||||| || || ||| | || || ||| |||||||||||||
Sbjct 296 CAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACC-AAAGTGGAACTATGATG 354
Query 269 GTTCAAGCACTGGTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGA 328
|||||||||| || |||||||||||| |||| |||||||| ||||||||||||||||| |
Sbjct 355 GTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCA 414
Query 329 TTTTCAAAGATCCGTTCCGTAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTC 388
| ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 415 TATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTC 474
Query 389 CTGCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTGAGATCTTT-GCTAAC 447
| ||||| || |||||||| || ||||| |||| ||||| ||| || ||||| || |||
Sbjct 475 CCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGC-AAC 533
Query 448 CCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAG 507
|||| ||||| ||||||||||||||||||||| || || |||||||||||||| | |||
Sbjct 534 CCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCCAG 593
Query 508 AAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTA-CCCTGGCCCTCAGGGACC 566
|| |||||||| |||||| |||| ||||| |||||||| || ||| ||||||||||||||
Sbjct 594 AAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCC-GGCCCTCAGGGACC 652
Query 567 ATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTA 626
||||| ||| |||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 653 GTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACTA 712
Query 627 CAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGG 686
|||||| || || || ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 713 CAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGG 772
Query 687 TCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTGATGAAGTGTGGAT 746
||||||||||||||| ||||| ||| | || |||||||| ||| |||||||| | ||| |
Sbjct 773 TCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGGT 832
Query 747 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTGTATCTTTTGACCC 806
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 833 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACCC 892
Query 807 GAAACCGA-TCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAAAT 865
|||||||| |||| ||||| |||||||| |||||||||||| |||||||||||| || |
Sbjct 893 GAAACCGATTCCC-GGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 951
Query 866 CGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGAAGCTCGGACTAA 925
| |||||||||||||| || |||||||| |||||||| || || || || | ||||| |
Sbjct 952 CAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGA 1011
Query 926 GACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACC 985
||||||| ||||||||| | |||||||||||||| || ||||| |||||||| |||||||
Sbjct 1012 GACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACC 1071
Query 986 ATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1045
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1131
Query 1046 GAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCTT 1105
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1132 GAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1191
Query 1106 CAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACACTCCTCTGGAAAC 1165
| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 1192 CGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATC 1251
Query 1166 CTTGA 1170
|||||
Sbjct 1252 CTTGA 1256
> AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synthetase
1.3 | chr3:6097414-6099595 FORWARD LENGTH=1341
Length=1341
Score = 712 bits (385), Expect = 0.0
Identities = 847/1064 (80%), Gaps = 56/1064 (5%)
Strand=Plus/Plus
Query 113 CAGATCTTGTTAACCTTGACCTCTCAGA--CAACAGTGAAAAGATCATCGCTGAATACAT 170
||||||| |||||||| ||||| | || | || | | ||| |||||||| ||||||||
Sbjct 103 CAGATCTCGTTAACCTCAACCTCACCGATGCCACCG-GGAAA-ATCATCGCCGAATACAT 160
Query 171 ATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGCCAGGACTCTATCAGGTCCTGT 230
|||| | ||||| ||||| || || || ||||||||||||||||| ||| |||| || ||
Sbjct 161 ATGGATCGGTGGATCTGGAATGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGT 220
Query 231 GACCGATCCATCGAAA-CTTCCGAAATGGAACTATGATGGTTCAAGCACTGGTCAAGCTC 289
||| |||||||| ||| ||||| || |||||||| || || || ||||| ||||| |||
Sbjct 221 GACTGATCCATC-AAAGCTTCCCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTG 279
Query 290 CTGGTA-AAGATAGTGAAGTGA-TCTTATACCCTCAAGCGATTTTCAAAGATCCGTTCCG 347
|||| | |||| |||||||| | || |||||||||| || || ||||| ||||| ||| |
Sbjct 280 CTGG-AGAAGACAGTGAAGTCATTC-TATACCCTCAGGCAATATTCAAGGATCCCTTCAG 337
Query 348 TAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGCGAGCCAATCCC 407
| |||||||||||| || || ||||||||||||||||| || || || || || || ||
Sbjct 338 GAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCC 397
Query 408 TACGAACAAG-CG-ACATGCTGCAGCTGAGATCTT-TGCTAACCCTG-CTGTTG--TAGC 461
|| |||||| | ||| | || ||| ||||||| || |||| | | |||| ||
Sbjct 398 AACCAACAAGAGGCACA-AC-GCTGCTAAGATCTTCAGC-CACCCCGAC-GTTGCCAAG- 452
Query 462 TGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAGAAGGATGTGAACTG 521
|| | ||| |||||||| || || ||||||||||||||| |||| ||||||||||||||
Sbjct 453 -GAGGAGCCTTGGTATGGGATTGAGCAAGAATACACTTTGATGCAAAAGGATGTGAACTG 511
Query 522 GCCTCTTGGATGGCCCATTGGTGGCTACCCTGGCCCTCAGGGACCATACTACTGCAGTAT 581
||| |||| ||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 512 GCCAATTGGTTGGCCTGTTGGTGGCTACCCTGGCCCTCAGGGACCTTACTACTGTGGTGT 571
Query 582 TGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTACAAGGCTTGT-TTGT 640
|||||||||||| | |||| | |||||||| ||||||||||||||||| ||| || |
Sbjct 572 GGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCTCACTACAAGGCCTGTCTT-T 630
Query 641 ATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCC 700
| || || || || ||| |||||||||||||||||||| || |||||||||||||
Sbjct 631 ACGCCGGTATTGGTATTTCTGGTATCAATGGAGAAGTCATGCCAGGCCAGTGGGAGTTCC 690
Query 701 AAGTCGGCCCATCGGTC-GG-TATCTCAGCTTCTGATGA--A-GTGTGGATCGCTCGTTA 755
|||||||||| | | | || ||| | || ||||| ||| | || ||| | ||||| ||
Sbjct 691 AAGTCGGCCC-T-GTTGAGGGTAT-T-AG-TTCTGGTGATCAAGTCTGGGTTGCTCGATA 745
Query 756 CATTTTGGAGAGGATCACAGAGAT-TGCTGGTGTGGTTGT-ATCTTTTGACCCGAAACC- 812
| || | ||||||||||| ||||| | ||||||| |||| | ||| |||||||||||
Sbjct 746 CCTTCTCGAGAGGATCACTGAGATCT-CTGGTGTAATTGTCAGCTTC-GACCCGAAACCA 803
Query 813 GATCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAA-ATCGATGA 871
| |||||||||| ||||| |||||||| |||||| ||||||||| ||||| | | ||||
Sbjct 804 G-TCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCAACTACAGCACTAAGA-CAATGA 861
Query 872 GGGAA-GAAGGAGGAT-ACGA-GATAATCAAGAAGGCGATTGAGAAGCT-CGGACT-AAG 926
| || || ||||||| | || | | |||||||| ||||| | |||||| | | || ||
Sbjct 862 GA-AACGATGGAGGATTA-GAAG-TGATCAAGAAAGCGATAGGGAAGCTTCAG-CTGAA- 916
Query 927 ACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACCA 986
|||||| ||||||||| | ||||||||||||||||||||||| |||||||| ||| | ||
Sbjct 917 ACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTCGTCTCACTGGAAAGCA 976
Query 987 TGAAACCGCTGACATCAACACTTTC-CTTTGGGGTGTTGCGAACCGTGGAGCATC-GATC 1044
|||||||| ||||||||||| ||| ||| |||| || |||||||||||||| || | |
Sbjct 977 CGAAACCGCAGACATCAACACATTCTCTT-GGGGAGTCGCGAACCGTGGAGCGTCAG-TG 1034
Query 1045 CGAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCT 1104
|||| ||||| || || ||||| ||||| ||||| ||||| || || || |||||||||
Sbjct 1035 AGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAGACAGAAGGCCAGCT 1094
Query 1105 TCAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGAC 1148
|| |||||||| |||||| |||| || |||||||| || |||||
Sbjct 1095 TCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGAC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5